Difference between revisions of "RXN1F-165"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6318 PWY-6318] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-165 RXN1F-165] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6318 PWY-6318] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-165 RXN1F-165] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
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** LEFT-TO-RIGHT
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* common name:
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* ec number:
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** L-phenylalanine degradation IV (mammalian, via side chain)
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** [http://enzyme.expasy.org/EC/1.14.11 EC-1.14.11]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''4''' reactions found over '''9''' reactions in the full pathway
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* With identifiers:
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* [[PHENDEHYD-RXN]]
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** 1 [[CPD1F-134]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[CPD1F-137]][c]
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** 0 associated gene:
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* With common name(s):
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** 1 reconstruction source(s) associated:
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** 1 gibberellin A9[c] '''+''' 1 oxygen[c] '''+''' 1 2-oxoglutarate[c] '''=>''' 1 CO2[c] '''+''' 1 succinate[c] '''+''' 1 gibberellin A4[c]
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*** [[annotation-in-silico_annotation]]
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* [[RXN-10814]]
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== Genes associated with this reaction  ==
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** 6 associated gene(s):
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_13538]]
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* Gene: [[Tiso_gene_3330]]
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*** [[Tiso_gene_17809]]
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_12889]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_6815]]
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== Pathways  ==
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*** [[Tiso_gene_15680]]
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* [[PWY-5070]], gibberellin biosynthesis I (non C-3, non C-13 hydroxylation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5070 PWY-5070]
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*** [[Tiso_gene_17718]]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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** 4 reconstruction source(s) associated:
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== Reconstruction information  ==
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*** [[annotation-experimental_annotation]]
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* Category: [[orthology]]
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*** [[manual-primary_network]]
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** Source: [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
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*** [[orthology-esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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* [[RXN-10815]]
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*** Tool: [[pantograph]]
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** 3 associated gene(s):
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*** [[Tiso_gene_18328]]
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*** [[Tiso_gene_18976]]
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*** [[Tiso_gene_18977]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-10821]]
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** 1 associated gene(s):
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*** [[Tiso_gene_7195]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMINE-N-PHENYLACETYLTRANSFERASE-RXN GLUTAMINE-N-PHENYLACETYLTRANSFERASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE-DECARBOXYLASE-RXN PHENYLALANINE-DECARBOXYLASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10816 RXN-10816]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10817 RXN-10817]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10819 RXN-10819]
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== External links  ==
 
== External links  ==
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* LIGAND-MAP:
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?map00360 map00360]
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** [http://www.genome.jp/dbget-bin/www_bget?R06336 R06336]
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{{#set: taxonomic range=TAX-33208}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=L-phenylalanine degradation IV (mammalian, via side chain)}}
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{{#set: ec number=EC-1.14.11}}
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{{#set: reaction found=4}}
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{{#set: gene associated=Tiso_gene_3330}}
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{{#set: total reaction=9}}
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{{#set: in pathway=PWY-5070}}
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{{#set: completion rate=44.0}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 20:47, 21 March 2018

Reaction RXN1F-165

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5070, gibberellin biosynthesis I (non C-3, non C-13 hydroxylation): PWY-5070
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN1F-165&oldid=43751"