Difference between revisions of "TransportSeed Light"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROXYMETVALDEHYDRAT-RXN DIHYDROXYMETVALDEHYDRAT-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TransportSeed_Light TransportSeed_Light] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reactio...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROXYMETVALDEHYDRAT-RXN DIHYDROXYMETVALDEHYDRAT-RXN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TransportSeed_Light TransportSeed_Light] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
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** 2,3-Dihydroxy-3-methylvalerate dehydratase
 
−
* ec number:
 
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** [http://enzyme.expasy.org/EC/4.2.1.9 EC-4.2.1.9]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[1-KETO-2-METHYLVALERATE]][c] '''=>''' 1 [[2-KETO-3-METHYL-VALERATE]][c] '''+''' 1 [[WATER]][c]
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** 1.0 [[Light]][e] '''=>''' 1.0 [[Light]][c]
 
* With common name(s):
 
* With common name(s):
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** 1 (R)-2,3-dihydroxy-3-methylpentanoate[c] '''=>''' 1 (S)-3-methyl-2-oxopentanoate[c] '''+''' 1 H2O[c]
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** 1.0 hν[e] '''=>''' 1.0 hν[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_1563]]
 
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** [[pantograph]]-[[athaliana]]
 
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** [[pantograph]]-[[synechocystis]]
 
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** [[pantograph]]-[[esiliculosus]]
 
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** [[pantograph]]-[[creinhardtii]]
 
 
== Pathways  ==
 
== Pathways  ==
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* [[PWY-5103]], L-isoleucine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5103 PWY-5103]
 
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** '''4''' reactions found over '''7''' reactions in the full pathway
 
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* [[ILEUSYN-PWY]], L-isoleucine biosynthesis I (from threonine): [http://metacyc.org/META/NEW-IMAGE?object=ILEUSYN-PWY ILEUSYN-PWY]
 
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** '''7''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-5101]], L-isoleucine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5101 PWY-5101]
 
−
** '''5''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5104]], L-isoleucine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5104 PWY-5104]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
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** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[manual]]
 
* Category: [[manual]]
−
** Source: [[manual-primary_network]]
+
** Source: [[manual-import_from_medium]]
−
* Category: [[annotation]]
+
*** Comment: [[added to manage seeds from extracellular to cytosol compartment]]
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27694 27694]
 
−
* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R05070 R05070]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P55186 P55186]
 
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** [http://www.uniprot.org/uniprot/Q9JUE0 Q9JUE0]
 
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** [http://www.uniprot.org/uniprot/P05791 P05791]
 
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** [http://www.uniprot.org/uniprot/Q9UZ03 Q9UZ03]
 
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** [http://www.uniprot.org/uniprot/P44851 P44851]
 
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** [http://www.uniprot.org/uniprot/Q02139 Q02139]
 
−
** [http://www.uniprot.org/uniprot/Q9PJ98 Q9PJ98]
 
−
** [http://www.uniprot.org/uniprot/P39522 P39522]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=2,3-Dihydroxy-3-methylvalerate dehydratase}}
+
{{#set: in pathway=}}
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{{#set: ec number=EC-4.2.1.9}}
+
{{#set: reconstruction category=manual}}
−
{{#set: gene associated=Tiso_gene_1563}}
+
{{#set: reconstruction source=manual-import_from_medium}}
−
{{#set: in pathway=PWY-5103|ILEUSYN-PWY|PWY-5101|PWY-5104}}
+
{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:47, 21 March 2018

Reaction TransportSeed_Light

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 hν[e] => 1.0 hν[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=TransportSeed_Light&oldid=43767"