Difference between revisions of "Tiso gene 406"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROXYMETVALDEHYDRAT-RXN DIHYDROXYMETVALDEHYDRAT-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
 
(Created page with "Category:Gene == Gene Tiso_gene_406 == * right end position: ** 4905 * transcription direction: ** POSITIVE * left end position: ** 623 * centisome position: ** 1.8510265...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROXYMETVALDEHYDRAT-RXN DIHYDROXYMETVALDEHYDRAT-RXN] ==
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== Gene Tiso_gene_406 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 4905
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* common name:
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* transcription direction:
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** 2,3-Dihydroxy-3-methylvalerate dehydratase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/4.2.1.9 EC-4.2.1.9]
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** 623
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* centisome position:
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** 1.8510265   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[METHIONINE--TRNA-LIGASE-RXN]]
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** 1 [[1-KETO-2-METHYLVALERATE]][c] '''=>''' 1 [[2-KETO-3-METHYL-VALERATE]][c] '''+''' 1 [[WATER]][c]
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** Source: [[annotation-experimental_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 (R)-2,3-dihydroxy-3-methylpentanoate[c] '''=>''' 1 (S)-3-methyl-2-oxopentanoate[c] '''+''' 1 H2O[c]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-16165]]
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== Genes associated with this reaction  ==
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** Source: [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** Assignment: ec-number
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* [[Tiso_gene_1563]]
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== Pathways associated ==
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** [[pantograph]]-[[athaliana]]
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* [[TRNA-CHARGING-PWY]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[PWY-5103]], L-isoleucine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5103 PWY-5103]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [[ILEUSYN-PWY]], L-isoleucine biosynthesis I (from threonine): [http://metacyc.org/META/NEW-IMAGE?object=ILEUSYN-PWY ILEUSYN-PWY]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-5101]], L-isoleucine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5101 PWY-5101]
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** '''5''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-5104]], L-isoleucine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5104 PWY-5104]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=4905}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27694 27694]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=623}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05070 R05070]
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{{#set: centisome position=1.8510265    }}
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* UNIPROT:
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{{#set: reaction associated=METHIONINE--TRNA-LIGASE-RXN|RXN-16165}}
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** [http://www.uniprot.org/uniprot/P55186 P55186]
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{{#set: pathway associated=TRNA-CHARGING-PWY}}
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** [http://www.uniprot.org/uniprot/Q9JUE0 Q9JUE0]
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** [http://www.uniprot.org/uniprot/P05791 P05791]
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** [http://www.uniprot.org/uniprot/Q9UZ03 Q9UZ03]
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** [http://www.uniprot.org/uniprot/P44851 P44851]
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** [http://www.uniprot.org/uniprot/Q02139 Q02139]
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** [http://www.uniprot.org/uniprot/Q9PJ98 Q9PJ98]
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** [http://www.uniprot.org/uniprot/P39522 P39522]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=2,3-Dihydroxy-3-methylvalerate dehydratase}}
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{{#set: ec number=EC-4.2.1.9}}
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{{#set: gene associated=Tiso_gene_1563}}
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{{#set: in pathway=PWY-5103|ILEUSYN-PWY|PWY-5101|PWY-5104}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation}}
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Latest revision as of 19:47, 21 March 2018

Gene Tiso_gene_406

  • right end position:
    • 4905
  • transcription direction:
    • POSITIVE
  • left end position:
    • 623
  • centisome position:
    • 1.8510265
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_406&oldid=43805"