Difference between revisions of "Tiso gene 3577"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIPHTINE--AMMONIA-LIGASE-RXN DIPHTINE--AMMONIA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
 
(Created page with "Category:Gene == Gene Tiso_gene_3577 == * right end position: ** 10364 * transcription direction: ** POSITIVE * left end position: ** 8361 * centisome position: ** 50.8793...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIPHTINE--AMMONIA-LIGASE-RXN DIPHTINE--AMMONIA-LIGASE-RXN] ==
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== Gene Tiso_gene_3577 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 10364
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* common name:
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* transcription direction:
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** endoribonuclease_l-psp_domain-containing_protein
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/6.3.1.14 EC-6.3.1.14]
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** 8361
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* centisome position:
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** 50.87933   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1.14.13.79-RXN]]
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** 1 [[AMMONIUM]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[DIPHTINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[DIPHTHAMIDE]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
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** Source: [[orthology-esiliculosus]]
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* With common name(s):
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* Reaction: [[RXN-1121]]
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** 1 ammonium[c] '''+''' 1 ATP[c] '''+''' 1 a diphthine-[translation elongation factor 2][c] '''=>''' 1 H+[c] '''+''' 1 a diphthamide-[translation elongation factor 2][c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-11535]]
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-3661]]
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* [[Tiso_gene_3764]]
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** Source: [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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* Reaction: [[RXN-4225]]
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***EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* Reaction: [[RXN-4230]]
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* [[PWY-6482]], diphthamide biosynthesis (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6482 PWY-6482]
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** Source: [[orthology-esiliculosus]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* Reaction: [[RXN-4231]]
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* [[PWY-7546]], diphthamide biosynthesis (eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7546 PWY-7546]
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** Source: [[orthology-esiliculosus]]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* Reaction: [[RXN-4241]]
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== Reconstruction information  ==
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** Source: [[orthology-esiliculosus]]
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* [[annotation]]:
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* Reaction: [[RXN-715]]
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** [[pathwaytools]]:
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** Source: [[orthology-esiliculosus]]
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*** [[in-silico_annotation]]
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* Reaction: [[RXN-716]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-717]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-773]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-774]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-775]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-778]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-779]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-8038]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-8040]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN1F-147]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN1F-148]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN1F-150]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN1F-151]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN1F-160]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN1F-161]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[UNSPECIFIC-MONOOXYGENASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
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* [[PWY-5034]]
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* [[PWY-699]]
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* [[PWY-7591]]
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* [[PWY-2181]]
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* [[PWY-2582]]
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* [[PWY-5947]]
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* [[PWY-5047]]
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* [[PWY-5640]]
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* [[PWY-5946]]
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* [[PWY-5943]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=10364}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19753 19753]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=8361}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03613 R03613]
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{{#set: centisome position=50.87933    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=1.14.13.79-RXN|RXN-1121|RXN-11535|RXN-3661|RXN-4225|RXN-4230|RXN-4231|RXN-4241|RXN-715|RXN-716|RXN-717|RXN-773|RXN-774|RXN-775|RXN-778|RXN-779|RXN-8038|RXN-8040|RXN1F-147|RXN1F-148|RXN1F-150|RXN1F-151|RXN1F-160|RXN1F-161|UNSPECIFIC-MONOOXYGENASE-RXN}}
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{{#set: common name=endoribonuclease_l-psp_domain-containing_protein}}
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{{#set: pathway associated=PWY-5034|PWY-699|PWY-7591|PWY-2181|PWY-2582|PWY-5947|PWY-5047|PWY-5640|PWY-5946|PWY-5943}}
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{{#set: ec number=EC-6.3.1.14}}
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{{#set: gene associated=Tiso_gene_3764}}
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{{#set: in pathway=PWY-6482|PWY-7546}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 19:48, 21 March 2018

Gene Tiso_gene_3577

  • right end position:
    • 10364
  • transcription direction:
    • POSITIVE
  • left end position:
    • 8361
  • centisome position:
    • 50.87933
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_3577&oldid=43884"