Difference between revisions of "RXN0-5063"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FERREDOXIN--NITRITE-REDUCTASE-RXN FERREDOXIN--NITRITE-REDUCTASE-RXN] == * direction: ** LEFT-TO-RIG...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5063 RXN0-5063] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FERREDOXIN--NITRITE-REDUCTASE-RXN FERREDOXIN--NITRITE-REDUCTASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5063 RXN0-5063] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** nitrite_reductase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.7.7.1 EC-1.7.7.1]
+
** [http://enzyme.expasy.org/EC/2.8.4.3 EC-2.8.4.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 6 [[Reduced-ferredoxins]][c] '''+''' 8 [[PROTON]][c] '''+''' 1 [[NITRITE]][c] '''=>''' 6 [[Oxidized-ferredoxins]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 2 [[WATER]][c]
+
** 1 [[6-Dimethylallyladenosine37-tRNAs]][c] '''+''' 1 [[Sulfurated-Sulfur-Acceptors]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[Donor-H2]][c] '''=>''' 1 [[Unsulfurated-Sulfur-Acceptors]][c] '''+''' 1 [[Acceptor]][c] '''+''' 1 [[MET]][c] '''+''' 1 [[CH33ADO]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[CPD-11592]][c]
 
* With common name(s):
 
* With common name(s):
−
** 6 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 8 H+[c] '''+''' 1 nitrite[c] '''=>''' 6 an oxidized ferredoxin [iron-sulfur] cluster[c] '''+''' 1 ammonium[c] '''+''' 2 H2O[c]
+
** 1 N6-dimethylallyladenosine37 in tRNA[c] '''+''' 1 a sulfurated [sulfur carrier][c] '''+''' 2 S-adenosyl-L-methionine[c] '''+''' 1 a reduced electron acceptor[c] '''=>''' 1 an unsulfurated [sulfur carrier][c] '''+''' 1 an oxidized electron acceptor[c] '''+''' 1 L-methionine[c] '''+''' 1 5'-deoxyadenosine[c] '''+''' 1 S-adenosyl-L-homocysteine[c] '''+''' 2 H+[c] '''+''' 1 2-methylthio-N6-dimethylallyladenosine37 in tRNA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_7919]]
+
* Gene: [[Tiso_gene_12431]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-381]], nitrate reduction II (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY-381 PWY-381]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY490-3]], nitrate reduction VI (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY490-3 PWY490-3]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
−
* Category: [[annotation]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00790 R00790]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=nitrite_reductase}}
+
{{#set: ec number=EC-2.8.4.3}}
−
{{#set: ec number=EC-1.7.7.1}}
+
{{#set: gene associated=Tiso_gene_12431}}
−
{{#set: gene associated=Tiso_gene_7919}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=PWY-381|PWY490-3}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
{{#set: reconstruction source=orthology-esiliculosus}}
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:49, 21 March 2018

Reaction RXN0-5063

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN0-5063&oldid=44022"