Difference between revisions of "FERREDOXIN--NITRITE-REDUCTASE-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.25.1-RXN 3.4.25.1-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 26S protease regulato...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FERREDOXIN--NITRITE-REDUCTASE-RXN FERREDOXIN--NITRITE-REDUCTASE-RXN] == * direction: ** LEFT-TO-RIG...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.25.1-RXN 3.4.25.1-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FERREDOXIN--NITRITE-REDUCTASE-RXN FERREDOXIN--NITRITE-REDUCTASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 26S protease regulatory subunit 7
+
** nitrite_reductase
−
** 26S protease regulatory subunit 8 homolog B
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.4.25.1 EC-3.4.25.1]
+
** [http://enzyme.expasy.org/EC/1.7.7.1 EC-1.7.7.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[General-Protein-Substrates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Peptides-holder]][c]
+
** 8 [[PROTON]][c] '''+''' 6 [[Reduced-ferredoxins]][c] '''+''' 1 [[NITRITE]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 2 [[WATER]][c] '''+''' 6 [[Oxidized-ferredoxins]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a protein[c] '''+''' 1 H2O[c] '''=>''' 1 a peptide[c]
+
** 8 H+[c] '''+''' 6 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 1 nitrite[c] '''=>''' 1 ammonium[c] '''+''' 2 H2O[c] '''+''' 6 an oxidized ferredoxin [iron-sulfur] cluster[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_16496]]
+
* Gene: [[Tiso_gene_7919]]
−
** Source: [[orthology-esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* Gene: [[Tiso_gene_3310]]
+
*** Assignment: EC-NUMBER
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_11901]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_2549]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_18135]]
+
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
* Gene: [[Tiso_gene_1855]]
+
** Source: [[orthology-athaliana]]
−
** Source: [[orthology-esiliculosus]]
+
** Source: [[orthology-athaliana]]
−
* Gene: [[Tiso_gene_7332]]
+
** Source: [[orthology-synechocystis]]
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
* Gene: [[Tiso_gene_20415]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_5953]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_19087]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_11443]]
+
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-381]], nitrate reduction II (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY-381 PWY-381]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY490-3]], nitrate reduction VI (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY490-3 PWY490-3]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
+
* LIGAND-RXN:
−
** [http://www.uniprot.org/uniprot/Q7DLR9 Q7DLR9]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00790 R00790]
−
** [http://www.uniprot.org/uniprot/P28062 P28062]
+
−
** [http://www.uniprot.org/uniprot/Q9TRJ7 Q9TRJ7]
+
−
** [http://www.uniprot.org/uniprot/P30656 P30656]
+
−
** [http://www.uniprot.org/uniprot/P30657 P30657]
+
−
** [http://www.uniprot.org/uniprot/P28074 P28074]
+
−
** [http://www.uniprot.org/uniprot/P40302 P40302]
+
−
** [http://www.uniprot.org/uniprot/O24633 O24633]
+
−
** [http://www.uniprot.org/uniprot/P40303 P40303]
+
−
** [http://www.uniprot.org/uniprot/Q9V122 Q9V122]
+
−
** [http://www.uniprot.org/uniprot/P40306 P40306]
+
−
** [http://www.uniprot.org/uniprot/P28063 P28063]
+
−
** [http://www.uniprot.org/uniprot/P25786 P25786]
+
−
** [http://www.uniprot.org/uniprot/P28076 P28076]
+
−
** [http://www.uniprot.org/uniprot/O13268 O13268]
+
−
** [http://www.uniprot.org/uniprot/P34064 P34064]
+
−
** [http://www.uniprot.org/uniprot/P60901 P60901]
+
−
** [http://www.uniprot.org/uniprot/P18421 P18421]
+
−
** [http://www.uniprot.org/uniprot/P18053 P18053]
+
−
** [http://www.uniprot.org/uniprot/P28072 P28072]
+
−
** [http://www.uniprot.org/uniprot/P22769 P22769]
+
−
** [http://www.uniprot.org/uniprot/P25043 P25043]
+
−
** [http://www.uniprot.org/uniprot/P28065 P28065]
+
−
** [http://www.uniprot.org/uniprot/P30186 P30186]
+
−
** [http://www.uniprot.org/uniprot/P60900 P60900]
+
−
** [http://www.uniprot.org/uniprot/P34065 P34065]
+
−
** [http://www.uniprot.org/uniprot/P34067 P34067]
+
−
** [http://www.uniprot.org/uniprot/P40301 P40301]
+
−
** [http://www.uniprot.org/uniprot/Q8AVD2 Q8AVD2]
+
−
** [http://www.uniprot.org/uniprot/Q7LZF1 Q7LZF1]
+
−
** [http://www.uniprot.org/uniprot/P40307 P40307]
+
−
** [http://www.uniprot.org/uniprot/P23724 P23724]
+
−
** [http://www.uniprot.org/uniprot/P28070 P28070]
+
−
** [http://www.uniprot.org/uniprot/P22141 P22141]
+
−
** [http://www.uniprot.org/uniprot/P49721 P49721]
+
−
** [http://www.uniprot.org/uniprot/P49720 P49720]
+
−
** [http://www.uniprot.org/uniprot/P25156 P25156]
+
−
** [http://www.uniprot.org/uniprot/Q09682 Q09682]
+
−
** [http://www.uniprot.org/uniprot/Q09720 Q09720]
+
−
** [http://www.uniprot.org/uniprot/P48004 P48004]
+
−
** [http://www.uniprot.org/uniprot/P38624 P38624]
+
−
** [http://www.uniprot.org/uniprot/P32379 P32379]
+
−
** [http://www.uniprot.org/uniprot/Q7LZF0 Q7LZF0]
+
−
** [http://www.uniprot.org/uniprot/P62333 P62333]
+
−
** [http://www.uniprot.org/uniprot/Q24178 Q24178]
+
−
** [http://www.uniprot.org/uniprot/Q27575 Q27575]
+
−
** [http://www.uniprot.org/uniprot/P21242 P21242]
+
−
** [http://www.uniprot.org/uniprot/P21243 P21243]
+
−
** [http://www.uniprot.org/uniprot/P23638 P23638]
+
−
** [http://www.uniprot.org/uniprot/P23639 P23639]
+
−
** [http://www.uniprot.org/uniprot/P12881 P12881]
+
−
** [http://www.uniprot.org/uniprot/P25787 P25787]
+
−
** [http://www.uniprot.org/uniprot/P20618 P20618]
+
−
** [http://www.uniprot.org/uniprot/P25788 P25788]
+
−
** [http://www.uniprot.org/uniprot/P25789 P25789]
+
−
** [http://www.uniprot.org/uniprot/P18420 P18420]
+
−
** [http://www.uniprot.org/uniprot/P18422 P18422]
+
−
** [http://www.uniprot.org/uniprot/P21670 P21670]
+
−
** [http://www.uniprot.org/uniprot/P52428 P52428]
+
−
** [http://www.uniprot.org/uniprot/P93395 P93395]
+
−
** [http://www.uniprot.org/uniprot/O04861 O04861]
+
−
** [http://www.uniprot.org/uniprot/Q8LD27 Q8LD27]
+
−
** [http://www.uniprot.org/uniprot/O48551 O48551]
+
−
** [http://www.uniprot.org/uniprot/O24030 O24030]
+
−
** [http://www.uniprot.org/uniprot/P42742 P42742]
+
−
** [http://www.uniprot.org/uniprot/O81147 O81147]
+
−
** [http://www.uniprot.org/uniprot/O23708 O23708]
+
−
** [http://www.uniprot.org/uniprot/O24616 O24616]
+
−
** [http://www.uniprot.org/uniprot/O81149 O81149]
+
−
** [http://www.uniprot.org/uniprot/Q42134 Q42134]
+
−
** [http://www.uniprot.org/uniprot/P34066 P34066]
+
−
** [http://www.uniprot.org/uniprot/O23712 O23712]
+
−
** [http://www.uniprot.org/uniprot/O23710 O23710]
+
−
** [http://www.uniprot.org/uniprot/Q7DLS1 Q7DLS1]
+
−
** [http://www.uniprot.org/uniprot/O81153 O81153]
+
−
** [http://www.uniprot.org/uniprot/O23714 O23714]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=26S protease regulatory subunit 7}}
+
{{#set: common name=nitrite_reductase}}
−
{{#set: common name=26S protease regulatory subunit 8 homolog B}}
+
{{#set: ec number=EC-1.7.7.1}}
−
{{#set: ec number=EC-3.4.25.1}}
+
{{#set: gene associated=Tiso_gene_7919}}
−
{{#set: gene associated=Tiso_gene_16496|Tiso_gene_3310|Tiso_gene_11901|Tiso_gene_2549|Tiso_gene_18135|Tiso_gene_1855|Tiso_gene_7332|Tiso_gene_20415|Tiso_gene_5953|Tiso_gene_19087|Tiso_gene_11443}}
+
{{#set: in pathway=PWY-381|PWY490-3}}
−
{{#set: in pathway=}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus}}
+
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:50, 21 March 2018

Reaction FERREDOXIN--NITRITE-REDUCTASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • nitrite_reductase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-381, nitrate reduction II (assimilatory): PWY-381
    • 3 reactions found over 3 reactions in the full pathway
  • PWY490-3, nitrate reduction VI (assimilatory): PWY490-3
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=FERREDOXIN--NITRITE-REDUCTASE-RXN&oldid=44042"