Difference between revisions of "Tiso gene 18959"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14385 RXN-14385] == * direction: ** LEFT-TO-RIGHT * common name: ** cysteine_mitochondrial ** c...")
(Created page with "Category:Gene == Gene Tiso_gene_18959 == * right end position: ** 2262 * transcription direction: ** POSITIVE * left end position: ** 11 * centisome position: ** 0.4089219...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14385 RXN-14385] ==
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== Gene Tiso_gene_18959 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 2262
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* common name:
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* transcription direction:
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** cysteine_mitochondrial
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** POSITIVE
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** cysteine_desulfurase_for_iron-sulfur_cluster_formation_suf
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* left end position:
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* ec number:
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** 11
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** [http://enzyme.expasy.org/EC/2.8.1.7 EC-2.8.1.7]
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* centisome position:
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** 0.40892196   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-11839]]
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** 1 [[CYS]][c] '''+''' 1 [[CD-S-SP-Complex]][c] '''=>''' 1 [[S-CD-S-SP-Complex]][c] '''+''' 1 [[L-ALPHA-ALANINE]][c]
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* With common name(s):
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** 1 L-cysteine[c] '''+''' 1 a [cysteine desulfurase]-S-sulfanyl-[disordered-form scaffold protein] complex[c] '''=>''' 1 an S-sulfanyl-[cysteine desulfurase]-S-sulfanyl-[disordered-form scaffold protein] complex[c] '''+''' 1 L-alanine[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_14710]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_11478]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_4284]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-7250]], [2Fe-2S] iron-sulfur cluster biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7250 PWY-7250]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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** Source: [[annotation-experimental_annotation]]
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* Reaction: [[RXN-11840]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-11841]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-11842]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=2262}}
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{{#set: common name=cysteine_mitochondrial}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=cysteine_desulfurase_for_iron-sulfur_cluster_formation_suf}}
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{{#set: left end position=11}}
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{{#set: ec number=EC-2.8.1.7}}
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{{#set: centisome position=0.40892196    }}
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{{#set: gene associated=Tiso_gene_14710|Tiso_gene_11478|Tiso_gene_4284}}
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{{#set: reaction associated=RXN-11839|RXN-11840|RXN-11841|RXN-11842|TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN}}
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{{#set: in pathway=PWY-7250}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:50, 21 March 2018

Gene Tiso_gene_18959

  • right end position:
    • 2262
  • transcription direction:
    • POSITIVE
  • left end position:
    • 11
  • centisome position:
    • 0.40892196
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_18959&oldid=44050"