Difference between revisions of "5.99.1.2-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-12...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.2-RXN 5.99.1.2-RXN] == * direction: ** REVERSIBLE * common name: ** dna_topoisomerase ** dna...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.2-RXN 5.99.1.2-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-32066 TAX-32066]
+
 
* common name:
 
* common name:
−
** L-glutamate degradation V (via hydroxyglutarate)
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** dna_topoisomerase
 +
** dna_topoisomerase1
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/5.99.1.2 EC-5.99.1.2]
 
* Synonym(s):
 
* Synonym(s):
−
** L-glutamate fermentation
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
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'''4''' reactions found over '''11''' reactions in the full pathway
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* With identifiers:
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* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
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** 1 [[Negatively-super-coiled-DNAs]][c] '''<=>''' 1 [[Relaxed-DNAs]][c]
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** 3 associated gene(s):
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* With common name(s):
−
*** [[Tiso_gene_16181]]
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** 1 a negatively supercoiled DNA[c] '''<=>''' 1 a relaxed DNA[c]
−
*** [[Tiso_gene_15327]]
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−
*** [[Tiso_gene_17451]]
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== Genes associated with this reaction  ==
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** 4 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
−
*** [[orthology-athaliana]]
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* Gene: [[Tiso_gene_14333]]
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*** [[orthology-creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
−
*** [[orthology-synechocystis]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_5748]]
−
* [[GLUTAMATE-DEHYDROGENASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
−
** 1 associated gene(s):
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*** Assignment: AUTOMATED-NAME-MATCH
−
*** [[Tiso_gene_2337]]
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* Gene: [[Tiso_gene_5747]]
−
** 2 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
−
*** [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_5036]]
−
* [[RXN-11662]]
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** Source: [[annotation-in-silico_annotation]]
−
** 7 associated gene(s):
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*** Assignment: AUTOMATED-NAME-MATCH
−
*** [[Tiso_gene_5857]]
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* Gene: [[Tiso_gene_5749]]
−
*** [[Tiso_gene_16703]]
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** Source: [[annotation-in-silico_annotation]]
−
*** [[Tiso_gene_14027]]
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*** Assignment: AUTOMATED-NAME-MATCH
−
*** [[Tiso_gene_14262]]
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* Gene: [[Tiso_gene_6569]]
−
*** [[Tiso_gene_14026]]
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** Source: [[annotation-in-silico_annotation]]
−
*** [[Tiso_gene_18838]]
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*** Assignment: AUTOMATED-NAME-MATCH
−
*** [[Tiso_gene_18839]]
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** Source: [[annotation-experimental_annotation]]
−
** 5 reconstruction source(s) associated:
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*** Assignment: AUTOMATED-NAME-MATCH
−
*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_200]]
−
*** [[orthology-athaliana]]
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** Source: [[annotation-in-silico_annotation]]
−
*** [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
−
*** [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_10513]]
−
*** [[orthology-esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
−
* [[RXN-11667]]
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*** Assignment: EC-NUMBER
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** 1 associated gene(s):
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** Source: [[orthology-esiliculosus]]
−
*** [[Tiso_gene_5857]]
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* Gene: [[Tiso_gene_1740]]
−
** 1 reconstruction source(s) associated:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[orthology-athaliana]]
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*** Assignment: EC-NUMBER
−
== Reaction(s) not found ==
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** Source: [[orthology-esiliculosus]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=ACETATE--COA-LIGASE-ADP-FORMING-RXN ACETATE--COA-LIGASE-ADP-FORMING-RXN]
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* Gene: [[Tiso_gene_5035]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=BUTYRYL-COA-DEHYDROGENASE-RXN BUTYRYL-COA-DEHYDROGENASE-RXN]
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** Source: [[annotation-in-silico_annotation]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=GLUTACONYL-COA-DECARBOXYLASE-RXN GLUTACONYL-COA-DECARBOXYLASE-RXN]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [http://metacyc.org/META/NEW-IMAGE?object=KETOGLUTREDUCT-RXN KETOGLUTREDUCT-RXN]
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* Gene: [[Tiso_gene_1739]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=R11-RXN R11-RXN]
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1082 RXN-1082]
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1083 RXN-1083]
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* Gene: [[Tiso_gene_3425]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1291]]
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways  ==
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-1239}}
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* UNIPROT:
−
{{#set: taxonomic range=TAX-32066}}
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** [http://www.uniprot.org/uniprot/Q7M0H8 Q7M0H8]
−
{{#set: common name=L-glutamate degradation V (via hydroxyglutarate)}}
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** [http://www.uniprot.org/uniprot/Q07050 Q07050]
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{{#set: common name=L-glutamate fermentation}}
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** [http://www.uniprot.org/uniprot/Q9JWZ5 Q9JWZ5]
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{{#set: reaction found=4}}
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** [http://www.uniprot.org/uniprot/Q59046 Q59046]
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{{#set: total reaction=11}}
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** [http://www.uniprot.org/uniprot/Q9PLZ2 Q9PLZ2]
−
{{#set: completion rate=36.0}}
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** [http://www.uniprot.org/uniprot/P47368 P47368]
 +
** [http://www.uniprot.org/uniprot/Q9CG80 Q9CG80]
 +
** [http://www.uniprot.org/uniprot/P43704 P43704]
 +
** [http://www.uniprot.org/uniprot/P43012 P43012]
 +
** [http://www.uniprot.org/uniprot/P0A620 P0A620]
 +
** [http://www.uniprot.org/uniprot/P04786 P04786]
 +
** [http://www.uniprot.org/uniprot/P13099 P13099]
 +
** [http://www.uniprot.org/uniprot/P06612 P06612]
 +
** [http://www.uniprot.org/uniprot/P11387 P11387]
 +
** [http://www.uniprot.org/uniprot/P07799 P07799]
 +
** [http://www.uniprot.org/uniprot/P93119 P93119]
 +
** [http://www.uniprot.org/uniprot/O13463 O13463]
 +
** [http://www.uniprot.org/uniprot/Q94705 Q94705]
 +
** [http://www.uniprot.org/uniprot/Q04750 Q04750]
 +
** [http://www.uniprot.org/uniprot/P14294 P14294]
 +
** [http://www.uniprot.org/uniprot/P30181 P30181]
 +
** [http://www.uniprot.org/uniprot/P34185 P34185]
 +
** [http://www.uniprot.org/uniprot/P30189 P30189]
 +
** [http://www.uniprot.org/uniprot/P40114 P40114]
 +
** [http://www.uniprot.org/uniprot/P41511 P41511]
 +
** [http://www.uniprot.org/uniprot/Q8I3Z9 Q8I3Z9]
 +
** [http://www.uniprot.org/uniprot/Q26024 Q26024]
 +
** [http://www.uniprot.org/uniprot/Q27529 Q27529]
 +
** [http://www.uniprot.org/uniprot/P41512 P41512]
 +
** [http://www.uniprot.org/uniprot/O24307 O24307]
 +
** [http://www.uniprot.org/uniprot/P71196 P71196]
 +
** [http://www.uniprot.org/uniprot/O70157 O70157]
 +
** [http://www.uniprot.org/uniprot/O60126 O60126]
 +
** [http://www.uniprot.org/uniprot/O61660 O61660]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=dna_topoisomerase}}
 +
{{#set: common name=dna_topoisomerase1}}
 +
{{#set: ec number=EC-5.99.1.2}}
 +
{{#set: gene associated=Tiso_gene_14333|Tiso_gene_5748|Tiso_gene_5747|Tiso_gene_5036|Tiso_gene_5749|Tiso_gene_6569|Tiso_gene_200|Tiso_gene_10513|Tiso_gene_1740|Tiso_gene_5035|Tiso_gene_1739|Tiso_gene_3425|Tiso_gene_1291}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:50, 21 March 2018

Reaction 5.99.1.2-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • dna_topoisomerase
    • dna_topoisomerase1
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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