Difference between revisions of "RXN-16139"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRIOSEPISOMERIZATION-RXN TRIOSEPISOMERIZATION-RXN] == * direction: ** REVERSIBLE * common name: **...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16139 RXN-16139] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** abhydrolase_domain-c...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRIOSEPISOMERIZATION-RXN TRIOSEPISOMERIZATION-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16139 RXN-16139] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
 
** ORF
 
** ORF
 +
** abhydrolase_domain-containing_protein_4-like
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/5.3.1.1 EC-5.3.1.1]
+
** [http://enzyme.expasy.org/EC/3.1.1.4 EC-3.1.1.4]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GAP]][c] '''<=>''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[CPD-17282]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[Glycerolipids]][c] '''+''' 1 [[5Z8Z11Z14Z17Z-EICOSAPENTAENOATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 D-glyceraldehyde 3-phosphate[c] '''<=>''' 1 glycerone phosphate[c]
+
** 1 H2O[c] '''+''' 1 a [glycerolipid]-icosapentaenoate[c] '''=>''' 1 H+[c] '''+''' 1 a glycerolipid[c] '''+''' 1 icosapentaenoate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_20000]]
+
* Gene: [[Tiso_gene_12960]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_19961]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_15047]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
** EXPERIMENTAL_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_12959]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[athaliana]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[synechocystis]]
+
* Gene: [[Tiso_gene_15046]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[creinhardtii]]
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_10646]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_19962]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
+
* [[PWY66-394]], aspirin triggered resolvin E biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-394 PWY66-394]
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
** '''1''' reactions found over '''5''' reactions in the full pathway
−
* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY66-373]], sucrose degradation V (sucrose &alpha;-glucosidase): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-373 PWY66-373]
+
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
−
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
+
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
+
−
** '''12''' reactions found over '''12''' reactions in the full pathway
+
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
+
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
−
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
+
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
+
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
−
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
+
−
** '''8''' reactions found over '''14''' reactions in the full pathway
+
−
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
+
−
** '''11''' reactions found over '''11''' reactions in the full pathway
+
−
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
+
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
−
* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
+
−
** '''8''' reactions found over '''10''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18585 18585]
+
−
* LIGAND-RXN:
+
−
** [http://www.genome.jp/dbget-bin/www_bget?R01015 R01015]
+
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P19118 P19118]
+
−
** [http://www.uniprot.org/uniprot/P21820 P21820]
+
−
** [http://www.uniprot.org/uniprot/P48501 P48501]
+
−
** [http://www.uniprot.org/uniprot/P62002 P62002]
+
−
** [http://www.uniprot.org/uniprot/O27120 O27120]
+
−
** [http://www.uniprot.org/uniprot/P27876 P27876]
+
−
** [http://www.uniprot.org/uniprot/Q9PMQ6 Q9PMQ6]
+
−
** [http://www.uniprot.org/uniprot/P19583 P19583]
+
−
** [http://www.uniprot.org/uniprot/Q9UXX2 Q9UXX2]
+
−
** [http://www.uniprot.org/uniprot/P47721 P47721]
+
−
** [http://www.uniprot.org/uniprot/P47670 P47670]
+
−
** [http://www.uniprot.org/uniprot/P50918 P50918]
+
−
** [http://www.uniprot.org/uniprot/P43727 P43727]
+
−
** [http://www.uniprot.org/uniprot/Q58923 Q58923]
+
−
** [http://www.uniprot.org/uniprot/O28965 O28965]
+
−
** [http://www.uniprot.org/uniprot/Q59182 Q59182]
+
−
** [http://www.uniprot.org/uniprot/O59536 O59536]
+
−
** [http://www.uniprot.org/uniprot/P36204 P36204]
+
−
** [http://www.uniprot.org/uniprot/Q9JW31 Q9JW31]
+
−
** [http://www.uniprot.org/uniprot/P04828 P04828]
+
−
** [http://www.uniprot.org/uniprot/P00943 P00943]
+
−
** [http://www.uniprot.org/uniprot/P00942 P00942]
+
−
** [http://www.uniprot.org/uniprot/P00940 P00940]
+
−
** [http://www.uniprot.org/uniprot/P60175 P60175]
+
−
** [http://www.uniprot.org/uniprot/P0A858 P0A858]
+
−
** [http://www.uniprot.org/uniprot/P60174 P60174]
+
−
** [http://www.uniprot.org/uniprot/P00941 P00941]
+
−
** [http://www.uniprot.org/uniprot/P15426 P15426]
+
−
** [http://www.uniprot.org/uniprot/P17751 P17751]
+
−
** [http://www.uniprot.org/uniprot/P00939 P00939]
+
−
** [http://www.uniprot.org/uniprot/P12863 P12863]
+
−
** [http://www.uniprot.org/uniprot/P07669 P07669]
+
−
** [http://www.uniprot.org/uniprot/P35144 P35144]
+
−
** [http://www.uniprot.org/uniprot/P48494 P48494]
+
−
** [http://www.uniprot.org/uniprot/Q7M4X7 Q7M4X7]
+
−
** [http://www.uniprot.org/uniprot/P29613 P29613]
+
−
** [http://www.uniprot.org/uniprot/P30741 P30741]
+
−
** [http://www.uniprot.org/uniprot/Q01893 Q01893]
+
−
** [http://www.uniprot.org/uniprot/P48499 P48499]
+
−
** [http://www.uniprot.org/uniprot/P48496 P48496]
+
−
** [http://www.uniprot.org/uniprot/P46226 P46226]
+
−
** [http://www.uniprot.org/uniprot/P46225 P46225]
+
−
** [http://www.uniprot.org/uniprot/P48492 P48492]
+
−
** [http://www.uniprot.org/uniprot/Q56738 Q56738]
+
−
** [http://www.uniprot.org/uniprot/Q7LZE5 Q7LZE5]
+
−
** [http://www.uniprot.org/uniprot/P46711 P46711]
+
−
** [http://www.uniprot.org/uniprot/O32757 O32757]
+
−
** [http://www.uniprot.org/uniprot/O74067 O74067]
+
−
** [http://www.uniprot.org/uniprot/P48491 P48491]
+
−
{{#set: direction=REVERSIBLE}}
+
 
{{#set: common name=ORF}}
 
{{#set: common name=ORF}}
−
{{#set: ec number=EC-5.3.1.1}}
+
{{#set: common name=abhydrolase_domain-containing_protein_4-like}}
−
{{#set: gene associated=Tiso_gene_20000|Tiso_gene_19961|Tiso_gene_10646|Tiso_gene_19962}}
+
{{#set: ec number=EC-3.1.1.4}}
−
{{#set: in pathway=PWY-1042|P341-PWY|PWY66-373|GLUCONEO-PWY|GLYCOLYSIS|P185-PWY|ANAGLYCOLYSIS-PWY|CALVIN-PWY|PWY-6142|PWY-5484|PWY66-399|PWY-7003}}
+
{{#set: gene associated=Tiso_gene_12960|Tiso_gene_15047|Tiso_gene_12959|Tiso_gene_15046}}
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
{{#set: in pathway=PWY66-394}}
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:51, 21 March 2018

Reaction RXN-16139

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • abhydrolase_domain-containing_protein_4-like
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY66-394, aspirin triggered resolvin E biosynthesis: PWY66-394
    • 1 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-16139&oldid=44174"