Difference between revisions of "TRIOSEPISOMERIZATION-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANS-RXN-101 TRANS-RXN-101] == * direction: ** LEFT-TO-RIGHT * common name: ** Sodium:proton antip...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRIOSEPISOMERIZATION-RXN TRIOSEPISOMERIZATION-RXN] == * direction: ** REVERSIBLE * common name: **...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANS-RXN-101 TRANS-RXN-101] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRIOSEPISOMERIZATION-RXN TRIOSEPISOMERIZATION-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Sodium:proton antiport
+
** ORF
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/5.3.1.1 EC-5.3.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NA+]][c] '''+''' 1 [[PROTON]][e] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[NA+]][e]
+
** 1 [[GAP]][c] '''<=>''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 Na+[c] '''+''' 1 H+[e] '''=>''' 1 H+[c] '''+''' 1 Na+[e]
+
** 1 D-glyceraldehyde 3-phosphate[c] '''<=>''' 1 glycerone phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_6998]]
+
* Gene: [[Tiso_gene_19961]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[creinhardtii]]
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_5563]]
+
** Source: [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[creinhardtii]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[orthology-athaliana]]
−
* [[Tiso_gene_18146]]
+
** Source: [[orthology-athaliana]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[orthology-synechocystis]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_20000]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_19962]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10646]]
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 +
** '''12''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
 +
** '''8''' reactions found over '''14''' reactions in the full pathway
 +
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
 +
** '''11''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY66-373]], sucrose degradation V (sucrose &alpha;-glucosidase): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-373 PWY66-373]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
 +
** '''8''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 
** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* RHEA:
−
{{#set: common name=Sodium:proton antiport}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18585 18585]
−
{{#set: gene associated=Tiso_gene_6998|Tiso_gene_5563|Tiso_gene_18146}}
+
* LIGAND-RXN:
−
{{#set: in pathway=}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01015 R01015]
−
{{#set: reconstruction category=orthology}}
+
* UNIPROT:
−
{{#set: reconstruction source=orthology-creinhardtii}}
+
** [http://www.uniprot.org/uniprot/P19118 P19118]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/P21820 P21820]
 +
** [http://www.uniprot.org/uniprot/P48501 P48501]
 +
** [http://www.uniprot.org/uniprot/P62002 P62002]
 +
** [http://www.uniprot.org/uniprot/O27120 O27120]
 +
** [http://www.uniprot.org/uniprot/P27876 P27876]
 +
** [http://www.uniprot.org/uniprot/Q9PMQ6 Q9PMQ6]
 +
** [http://www.uniprot.org/uniprot/P19583 P19583]
 +
** [http://www.uniprot.org/uniprot/Q9UXX2 Q9UXX2]
 +
** [http://www.uniprot.org/uniprot/P47721 P47721]
 +
** [http://www.uniprot.org/uniprot/P47670 P47670]
 +
** [http://www.uniprot.org/uniprot/P50918 P50918]
 +
** [http://www.uniprot.org/uniprot/P43727 P43727]
 +
** [http://www.uniprot.org/uniprot/Q58923 Q58923]
 +
** [http://www.uniprot.org/uniprot/O28965 O28965]
 +
** [http://www.uniprot.org/uniprot/Q59182 Q59182]
 +
** [http://www.uniprot.org/uniprot/O59536 O59536]
 +
** [http://www.uniprot.org/uniprot/P36204 P36204]
 +
** [http://www.uniprot.org/uniprot/Q9JW31 Q9JW31]
 +
** [http://www.uniprot.org/uniprot/P04828 P04828]
 +
** [http://www.uniprot.org/uniprot/P00943 P00943]
 +
** [http://www.uniprot.org/uniprot/P00942 P00942]
 +
** [http://www.uniprot.org/uniprot/P00940 P00940]
 +
** [http://www.uniprot.org/uniprot/P60175 P60175]
 +
** [http://www.uniprot.org/uniprot/P0A858 P0A858]
 +
** [http://www.uniprot.org/uniprot/P60174 P60174]
 +
** [http://www.uniprot.org/uniprot/P00941 P00941]
 +
** [http://www.uniprot.org/uniprot/P15426 P15426]
 +
** [http://www.uniprot.org/uniprot/P17751 P17751]
 +
** [http://www.uniprot.org/uniprot/P00939 P00939]
 +
** [http://www.uniprot.org/uniprot/P12863 P12863]
 +
** [http://www.uniprot.org/uniprot/P07669 P07669]
 +
** [http://www.uniprot.org/uniprot/P35144 P35144]
 +
** [http://www.uniprot.org/uniprot/P48494 P48494]
 +
** [http://www.uniprot.org/uniprot/Q7M4X7 Q7M4X7]
 +
** [http://www.uniprot.org/uniprot/P29613 P29613]
 +
** [http://www.uniprot.org/uniprot/P30741 P30741]
 +
** [http://www.uniprot.org/uniprot/Q01893 Q01893]
 +
** [http://www.uniprot.org/uniprot/P48499 P48499]
 +
** [http://www.uniprot.org/uniprot/P48496 P48496]
 +
** [http://www.uniprot.org/uniprot/P46226 P46226]
 +
** [http://www.uniprot.org/uniprot/P46225 P46225]
 +
** [http://www.uniprot.org/uniprot/P48492 P48492]
 +
** [http://www.uniprot.org/uniprot/Q56738 Q56738]
 +
** [http://www.uniprot.org/uniprot/Q7LZE5 Q7LZE5]
 +
** [http://www.uniprot.org/uniprot/P46711 P46711]
 +
** [http://www.uniprot.org/uniprot/O32757 O32757]
 +
** [http://www.uniprot.org/uniprot/O74067 O74067]
 +
** [http://www.uniprot.org/uniprot/P48491 P48491]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-5.3.1.1}}
 +
{{#set: gene associated=Tiso_gene_19961|Tiso_gene_20000|Tiso_gene_19962|Tiso_gene_10646}}
 +
{{#set: in pathway=PWY-1042|P341-PWY|PWY66-399|P185-PWY|GLUCONEO-PWY|GLYCOLYSIS|PWY-6142|CALVIN-PWY|ANAGLYCOLYSIS-PWY|PWY-5484|PWY66-373|PWY-7003}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:51, 21 March 2018

Reaction TRIOSEPISOMERIZATION-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-1042, glycolysis IV (plant cytosol): PWY-1042
    • 9 reactions found over 10 reactions in the full pathway
  • P341-PWY, glycolysis V (Pyrococcus): P341-PWY
    • 6 reactions found over 9 reactions in the full pathway
  • PWY66-399, gluconeogenesis III: PWY66-399
    • 10 reactions found over 12 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
    • 12 reactions found over 12 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
    • 8 reactions found over 14 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY, glycolysis III (from glucose): ANAGLYCOLYSIS-PWY
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
    • 11 reactions found over 11 reactions in the full pathway
  • PWY66-373, sucrose degradation V (sucrose α-glucosidase): PWY66-373
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7003, glycerol degradation to butanol: PWY-7003
    • 8 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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