Difference between revisions of "Tiso gene 16954"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13617 RXN-13617] == * direction: ** LEFT-TO-RIGHT * common name: ** thiolase ** acetyl-_c-acety...")
(Created page with "Category:Gene == Gene Tiso_gene_16954 == * right end position: ** 3917 * transcription direction: ** POSITIVE * left end position: ** 591 * centisome position: ** 10.48616...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13617 RXN-13617] ==
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== Gene Tiso_gene_16954 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3917
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* common name:
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* transcription direction:
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** thiolase
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** POSITIVE
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** acetyl-_c-acetyltransferase
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* left end position:
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** 3-ketoacyl-_thiolase
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** 591
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
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** 10.48616   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1.5.1.20-RXN]]
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** 1 [[CPD0-2123]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[CPD-196]][c] '''+''' 1 [[ACETYL-COA]][c]
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* With common name(s):
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** 1 3-oxodecanoyl-CoA[c] '''+''' 1 coenzyme A[c] '''=>''' 1 octanoyl-CoA[c] '''+''' 1 acetyl-CoA[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_15327]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3855]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_17451]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10116]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_16181]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_3856]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-7094]], fatty acid salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7094 PWY-7094]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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* [[PWY-2201]]
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* [[1CMET2-PWY]]
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* [[CODH-PWY]]
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* [[PWY-3841]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=3917}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31089 31089]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=591}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03778 R03778]
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{{#set: centisome position=10.48616    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=1.5.1.20-RXN}}
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{{#set: common name=thiolase}}
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{{#set: pathway associated=PWY-2201|1CMET2-PWY|CODH-PWY|PWY-3841}}
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{{#set: common name=acetyl-_c-acetyltransferase}}
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{{#set: common name=3-ketoacyl-_thiolase}}
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{{#set: ec number=EC-2.3.1.16}}
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{{#set: gene associated=Tiso_gene_15327|Tiso_gene_3855|Tiso_gene_17451|Tiso_gene_10116|Tiso_gene_16181|Tiso_gene_3856}}
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{{#set: in pathway=PWY-7094}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|orthology-athaliana|annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:51, 21 March 2018

Gene Tiso_gene_16954

  • right end position:
    • 3917
  • transcription direction:
    • POSITIVE
  • left end position:
    • 591
  • centisome position:
    • 10.48616
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_16954&oldid=44202"