Difference between revisions of "GCVP-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBONUCLEOSIDE-DIP-REDUCTII-RXN RIBONUCLEOSIDE-DIP-REDUCTII-RXN] == * direction: ** LEFT-TO-RIGHT *...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVP-RXN GCVP-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/1.4.4...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBONUCLEOSIDE-DIP-REDUCTII-RXN RIBONUCLEOSIDE-DIP-REDUCTII-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVP-RXN GCVP-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
−
* common name:
+
−
** ribonucleoside-diphosphate_reductase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.17.4.1 EC-1.17.4.1]
+
** [http://enzyme.expasy.org/EC/1.4.4.2 EC-1.4.4.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Reduced-NrdH-Proteins]][c] '''+''' 1 [[CDP]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Oxidized-NrdH-Proteins]][c] '''+''' 1 [[DCDP]][c]
+
** 1 [[PROTEIN-LIPOYLLYSINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[GLY]][c] '''<=>''' 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a reduced NrdH glutaredoxin-like protein[c] '''+''' 1 CDP[c] '''=>''' 1 H2O[c] '''+''' 1 an oxidized NrdH glutaredoxin-like protein[c] '''+''' 1 dCDP[c]
+
** 1 a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine[c] '''+''' 1 H+[c] '''+''' 1 glycine[c] '''<=>''' 1 a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10138]]
+
* Gene: [[Tiso_gene_17287]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_9915]]
+
* Gene: [[Tiso_gene_428]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
−
* [[Tiso_gene_9916]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_10617]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
+
* [[GLYCINE-SYN2-PWY]], glycine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE-SYN2-PWY GLYCINE-SYN2-PWY]
−
** '''12''' reactions found over '''17''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[GLYCLEAV-PWY]], glycine cleavage: [http://metacyc.org/META/NEW-IMAGE?object=GLYCLEAV-PWY GLYCLEAV-PWY]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[manual]]
−
** [[pathwaytools]]:
+
** Source: [[manual-primary_network]]
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* LIGAND-RXN:
−
{{#set: common name=ribonucleoside-diphosphate_reductase}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03425 R03425]
−
{{#set: ec number=EC-1.17.4.1}}
+
* UNIPROT:
−
{{#set: gene associated=Tiso_gene_10138|Tiso_gene_9915|Tiso_gene_9916|Tiso_gene_10617}}
+
** [http://www.uniprot.org/uniprot/P26969 P26969]
−
{{#set: in pathway=PWY0-166}}
+
** [http://www.uniprot.org/uniprot/Q9UXT1 Q9UXT1]
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/Q9JT86 Q9JT86]
 +
** [http://www.uniprot.org/uniprot/Q9UXT0 Q9UXT0]
 +
** [http://www.uniprot.org/uniprot/P23378 P23378]
 +
** [http://www.uniprot.org/uniprot/P33195 P33195]
 +
** [http://www.uniprot.org/uniprot/O80988 O80988]
 +
** [http://www.uniprot.org/uniprot/Q94B78 Q94B78]
 +
** [http://www.uniprot.org/uniprot/O32915 O32915]
 +
** [http://www.uniprot.org/uniprot/O22575 O22575]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: ec number=EC-1.4.4.2}}
 +
{{#set: gene associated=Tiso_gene_17287|Tiso_gene_428}}
 +
{{#set: in pathway=GLYCINE-SYN2-PWY|GLYCLEAV-PWY}}
 +
{{#set: reconstruction category=orthology|manual}}
 +
{{#set: reconstruction source=manual-primary_network|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=esiliculosus}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 19:51, 21 March 2018

Reaction GCVP-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links




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