Difference between revisions of "RXN-8346"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALISOM-RXN 3-ISOPROPYLMALISOM-RXN] == * direction: ** REVERSIBLE * common name: ** 3-is...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8346 RXN-8346] == * direction: ** LEFT-TO-RIGHT * common name: ** di-homo-γ-linolenate &D...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALISOM-RXN 3-ISOPROPYLMALISOM-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8346 RXN-8346] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 3-isopropylmalate dehydratase
+
** di-homo-γ-linolenate Δ5 desaturase
−
** ORF
+
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.14.19.30 EC-1.14.19.30]
 
* Synonym(s):
 
* Synonym(s):
−
** (2R,3S)-3-isopropylmalate hydro-lyase
 
−
** β-isopropylmalate dehydratase
 
−
** α-isopropylmalate isomerase
 
−
** 3-isopropylmalate hydro-lyase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[CPD-9451]][c] '''<=>''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c]
+
** 2 [[PROTON]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD-17283]][c] '''+''' 2 [[FERROCYTOCHROME-B5]][c] '''=>''' 2 [[WATER]][c] '''+''' 2 [[FERRICYTOCHROME-B5]][c] '''+''' 1 [[CPD-17284]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 2-isopropylmaleate[c] '''<=>''' 1 (2S)-2-isopropylmalate[c]
+
** 2 H+[c] '''+''' 1 oxygen[c] '''+''' 1 a [glycerolipid]-di-homo-&gamma;-linolenate[c] '''+''' 2 a ferrocytochrome b5[c] '''=>''' 2 H2O[c] '''+''' 2 a ferricytochrome b5[c] '''+''' 1 a [glycerolipid]-arachidonate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_12778]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** EXPERIMENTAL_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
+
* [[PWY-5353]], arachidonate biosynthesis I (6-desaturase, lower eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5353 PWY-5353]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
+
* [[PWY-7601]], arachidonate biosynthesis IV (8-detaturase, lower eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7601 PWY-7601]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''7''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[athaliana]]
+
*** Tool: [[pathwaytools]]
−
*** [[esiliculosus]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16293 16293]
+
{{#set: common name=di-homo-&gamma;-linolenate &Delta;5 desaturase}}
−
* LIGAND-RXN:
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{{#set: ec number=EC-1.14.19.30}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03968 R03968]
+
{{#set: in pathway=PWY-5353|PWY-7601}}
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q9PLW1 Q9PLW1]
+
−
** [http://www.uniprot.org/uniprot/Q9JU82 Q9JU82]
+
−
** [http://www.uniprot.org/uniprot/P80858 P80858]
+
−
** [http://www.uniprot.org/uniprot/Q9UZ07 Q9UZ07]
+
−
** [http://www.uniprot.org/uniprot/Q9JU81 Q9JU81]
+
−
** [http://www.uniprot.org/uniprot/Q58673 Q58673]
+
−
** [http://www.uniprot.org/uniprot/Q02144 Q02144]
+
−
** [http://www.uniprot.org/uniprot/P44968 P44968]
+
−
** [http://www.uniprot.org/uniprot/Q58667 Q58667]
+
−
** [http://www.uniprot.org/uniprot/P44438 P44438]
+
−
** [http://www.uniprot.org/uniprot/P0A6A6 P0A6A6]
+
−
** [http://www.uniprot.org/uniprot/Q9PLW2 Q9PLW2]
+
−
** [http://www.uniprot.org/uniprot/Q44022 Q44022]
+
−
** [http://www.uniprot.org/uniprot/Q44023 Q44023]
+
−
** [http://www.uniprot.org/uniprot/Q44427 Q44427]
+
−
** [http://www.uniprot.org/uniprot/P17279 P17279]
+
−
** [http://www.uniprot.org/uniprot/P04787 P04787]
+
−
** [http://www.uniprot.org/uniprot/P15717 P15717]
+
−
** [http://www.uniprot.org/uniprot/P18250 P18250]
+
−
** [http://www.uniprot.org/uniprot/Q02142 Q02142]
+
−
** [http://www.uniprot.org/uniprot/P30126 P30126]
+
−
** [http://www.uniprot.org/uniprot/P50181 P50181]
+
−
** [http://www.uniprot.org/uniprot/P07264 P07264]
+
−
** [http://www.uniprot.org/uniprot/P74207 P74207]
+
−
** [http://www.uniprot.org/uniprot/O86534 O86534]
+
−
** [http://www.uniprot.org/uniprot/O86535 O86535]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=3-isopropylmalate dehydratase}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: common name=(2R,3S)-3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase|&alpha;-isopropylmalate isomerase|3-isopropylmalate hydro-lyase}}
+
−
{{#set: gene associated=Tiso_gene_12778}}
+
−
{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=athaliana|esiliculosus}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 20:51, 21 March 2018

Reaction RXN-8346

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • di-homo-γ-linolenate Δ5 desaturase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Pathways

  • PWY-5353, arachidonate biosynthesis I (6-desaturase, lower eukaryotes): PWY-5353
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-7601, arachidonate biosynthesis IV (8-detaturase, lower eukaryotes): PWY-7601
    • 7 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-8346&oldid=44221"