Difference between revisions of "S-ADENMETSYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.58-RXN 4.2.1.58-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** (3R)-3-hydroxybutanoy...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=S-ADENMETSYN-RXN S-ADENMETSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** S-adenosylmet...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.58-RXN 4.2.1.58-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=S-ADENMETSYN-RXN S-ADENMETSYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase
+
** S-adenosylmethionine synthase 1
−
** polyketide_synthase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/2.5.1.6 EC-2.5.1.6]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
−
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
+
 
* Synonym(s):
 
* Synonym(s):
−
** crotonoyl-[acyl-carrier-protein] hydratase
 
−
** β-hydroxybutyryl acyl carrier protein (ACP) dehydrase
 
−
** β-hydroxybutyryl acyl carrier protein dehydrase
 
−
** enoyl acyl carrier protein hydrase
 
−
** crotonyl acyl carrier protein hydratase
 
−
** 3-hydroxybutyryl acyl carrier protein dehydratase
 
−
** β-hydroxybutyryl acyl carrier  protein dehydrase
 
−
** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)
 
−
** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Beta-3-hydroxybutyryl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Crotonyl-ACPs]][c]
+
** 1 [[MET]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a (3R)-3-hydroxybutanoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a crotonyl-[acp][c]
+
** 1 L-methionine[c] '''+''' 1 ATP[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 S-adenosyl-L-methionine[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10876]]
+
* Gene: [[Tiso_gene_13443]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_136]]
+
** Source: [[orthology-athaliana]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-synechocystis]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_500]]
+
** Source: [[orthology-creinhardtii]]
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13394]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_135]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6884]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
+
* [[SAM-PWY]], S-adenosyl-L-methionine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SAM-PWY SAM-PWY]
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
+
* [[METHIONINE-DEG1-PWY]], L-methionine degradation I (to L-homocysteine): [http://metacyc.org/META/NEW-IMAGE?object=METHIONINE-DEG1-PWY METHIONINE-DEG1-PWY]
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
+
* [[ETHYL-PWY]], ethylene biosynthesis I (plants): [http://metacyc.org/META/NEW-IMAGE?object=ETHYL-PWY ETHYL-PWY]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5912]], 2'-deoxymugineic acid phytosiderophore biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5912 PWY-5912]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5041]], S-adenosyl-L-methionine cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5041 PWY-5041]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* Category: [[orthology]]
−
** [[primary_network]]
+
** Source: [[orthology-athaliana]]
−
* [[annotation]]:
+
*** Tool: [[pantograph]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-creinhardtii]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21080 21080]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04428 R04428]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00177 R00177]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P19358 P19358]
 +
** [http://www.uniprot.org/uniprot/P18298 P18298]
 +
** [http://www.uniprot.org/uniprot/Q91X83 Q91X83]
 +
** [http://www.uniprot.org/uniprot/Q9PNJ8 Q9PNJ8]
 +
** [http://www.uniprot.org/uniprot/P54419 P54419]
 +
** [http://www.uniprot.org/uniprot/P56460 P56460]
 +
** [http://www.uniprot.org/uniprot/Q9JVV6 Q9JVV6]
 +
** [http://www.uniprot.org/uniprot/Q9CEE0 Q9CEE0]
 +
** [http://www.uniprot.org/uniprot/O50163 O50163]
 +
** [http://www.uniprot.org/uniprot/P43762 P43762]
 +
** [http://www.uniprot.org/uniprot/P23686 P23686]
 +
** [http://www.uniprot.org/uniprot/P17562 P17562]
 +
** [http://www.uniprot.org/uniprot/Q7M4Y8 Q7M4Y8]
 +
** [http://www.uniprot.org/uniprot/Q9S992 Q9S992]
 +
** [http://www.uniprot.org/uniprot/Q90862 Q90862]
 +
** [http://www.uniprot.org/uniprot/P13444 P13444]
 +
** [http://www.uniprot.org/uniprot/P31153 P31153]
 +
** [http://www.uniprot.org/uniprot/Q00266 Q00266]
 +
** [http://www.uniprot.org/uniprot/P43281 P43281]
 +
** [http://www.uniprot.org/uniprot/P40320 P40320]
 +
** [http://www.uniprot.org/uniprot/P43280 P43280]
 +
** [http://www.uniprot.org/uniprot/P43282 P43282]
 +
** [http://www.uniprot.org/uniprot/P48498 P48498]
 +
** [http://www.uniprot.org/uniprot/P10659 P10659]
 +
** [http://www.uniprot.org/uniprot/Q39465 Q39465]
 +
** [http://www.uniprot.org/uniprot/P48466 P48466]
 +
** [http://www.uniprot.org/uniprot/P49612 P49612]
 +
** [http://www.uniprot.org/uniprot/P49613 P49613]
 +
** [http://www.uniprot.org/uniprot/P78003 P78003]
 +
** [http://www.uniprot.org/uniprot/Q49070 Q49070]
 +
** [http://www.uniprot.org/uniprot/P0A817 P0A817]
 +
** [http://www.uniprot.org/uniprot/P50299 P50299]
 +
** [http://www.uniprot.org/uniprot/O22350 O22350]
 +
** [http://www.uniprot.org/uniprot/P24260 P24260]
 +
** [http://www.uniprot.org/uniprot/O60198 O60198]
 +
** [http://www.uniprot.org/uniprot/Q12642 Q12642]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase}}
+
{{#set: common name=S-adenosylmethionine synthase 1}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: ec number=EC-2.5.1.6}}
−
{{#set: ec number=EC-2.3.1.86}}
+
{{#set: gene associated=Tiso_gene_13443}}
−
{{#set: ec number=EC-2.3.1.85}}
+
{{#set: in pathway=SAM-PWY|METHIONINE-DEG1-PWY|ETHYL-PWY|PWY-5912|PWY-5041}}
−
{{#set: ec number=EC-4.2.1.59}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: common name=crotonoyl-[acyl-carrier-protein] hydratase|β-hydroxybutyryl acyl carrier protein (ACP) dehydrase|β-hydroxybutyryl acyl carrier protein dehydrase|enoyl acyl carrier protein hydrase|crotonyl acyl carrier protein hydratase|3-hydroxybutyryl acyl carrier protein dehydratase|β-hydroxybutyryl acyl carrier  protein dehydrase|(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)|(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
−
{{#set: gene associated=Tiso_gene_10876|Tiso_gene_136|Tiso_gene_500|Tiso_gene_13394|Tiso_gene_135|Tiso_gene_6884}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: in pathway=PWY-5971|PWY-5994|PWY-7388}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 19:51, 21 March 2018

Reaction S-ADENMETSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • S-adenosylmethionine synthase 1
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-methionine[c] + 1 ATP[c] + 1 H2O[c] => 1 phosphate[c] + 1 S-adenosyl-L-methionine[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • SAM-PWY, S-adenosyl-L-methionine biosynthesis: SAM-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • METHIONINE-DEG1-PWY, L-methionine degradation I (to L-homocysteine): METHIONINE-DEG1-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • ETHYL-PWY, ethylene biosynthesis I (plants): ETHYL-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5912, 2'-deoxymugineic acid phytosiderophore biosynthesis: PWY-5912
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-5041, S-adenosyl-L-methionine cycle II: PWY-5041
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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