Difference between revisions of "IDP"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.58-RXN 4.2.1.58-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** (3R)-3-hydroxybutanoy...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=IDP IDP] == * smiles: ** C(OP(=O)([O-])OP([O-])(=O)[O-])C1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC=NC=23)...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.58-RXN 4.2.1.58-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=IDP IDP] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C(OP(=O)([O-])OP([O-])(=O)[O-])C1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC=NC=23)))
 
* common name:
 
* common name:
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** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase
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** IDP
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** polyketide_synthase
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* inchi key:
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* ec number:
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** InChIKey=JPXZQMKKFWMMGK-KQYNXXCUSA-K
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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* molecular weight:
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** 425.165   
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** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
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* Synonym(s):
 
* Synonym(s):
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** crotonoyl-[acyl-carrier-protein] hydratase
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** riboxin
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** β-hydroxybutyryl acyl carrier protein (ACP) dehydrase
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** inosine diphosphate
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** β-hydroxybutyryl acyl carrier protein dehydrase
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** enoyl acyl carrier protein hydrase
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** crotonyl acyl carrier protein hydratase
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** 3-hydroxybutyryl acyl carrier protein dehydratase
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** β-hydroxybutyryl acyl carrier  protein dehydrase
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** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)
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** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[ATIDm]]
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** 1 [[Beta-3-hydroxybutyryl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Crotonyl-ACPs]][c]
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* [[RXN-14003]]
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* With common name(s):
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* [[ATID]]
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** 1 a (3R)-3-hydroxybutanoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a crotonyl-[acp][c]
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== Reaction(s) known to produce the compound ==
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* [[RXN0-5073]]
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== Genes associated with this reaction  ==
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* [[ITUP]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[ITCY]]
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* [[Tiso_gene_6884]]
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== Reaction(s) of unknown directionality ==
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** EXPERIMENTAL_ANNOTATION
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* [[RXN-14120]]
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_13394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_136]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_500]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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* CAS : 86-04-4
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** [http://www.genome.jp/dbget-bin/www_bget?R04428 R04428]
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* BIGG : idp
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{{#set: direction=LEFT-TO-RIGHT}}
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* PUBCHEM:
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{{#set: common name=(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=7156952 7156952]
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{{#set: common name=polyketide_synthase}}
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* HMDB : HMDB03335
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{{#set: ec number=EC-2.3.1.86}}
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* LIGAND-CPD:
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{{#set: ec number=EC-2.3.1.85}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00104 C00104]
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{{#set: ec number=EC-4.2.1.59}}
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* CHEMSPIDER:
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{{#set: common name=crotonoyl-[acyl-carrier-protein] hydratase|β-hydroxybutyryl acyl carrier protein (ACP) dehydrase|β-hydroxybutyryl acyl carrier protein dehydrase|enoyl acyl carrier protein hydrase|crotonyl acyl carrier protein hydratase|3-hydroxybutyryl acyl carrier protein dehydratase|β-hydroxybutyryl acyl carrier  protein dehydrase|(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)|(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase}}
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** [http://www.chemspider.com/Chemical-Structure.3279691.html 3279691]
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{{#set: gene associated=Tiso_gene_6884|Tiso_gene_13394|Tiso_gene_136|Tiso_gene_500|Tiso_gene_135|Tiso_gene_10876}}
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* CHEBI:
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{{#set: in pathway=PWY-5971|PWY-5994|PWY-7388}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58280 58280]
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{{#set: reconstruction category=manual}}
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* METABOLIGHTS : MTBLC58280
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{{#set: reconstruction source=primary_network}}
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{{#set: smiles=C(OP(=O)([O-])OP([O-])(=O)[O-])C1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC=NC=23)))}}
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{{#set: reconstruction category=annotation}}
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{{#set: common name=IDP}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: inchi key=InChIKey=JPXZQMKKFWMMGK-KQYNXXCUSA-K}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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{{#set: molecular weight=425.165    }}
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{{#set: common name=riboxin|inosine diphosphate}}
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{{#set: consumed by=ATIDm|RXN-14003|ATID}}
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{{#set: produced by=RXN0-5073|ITUP|ITCY}}
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{{#set: reversible reaction associated=RXN-14120}}

Latest revision as of 20:52, 21 March 2018

Metabolite IDP

  • smiles:
    • C(OP(=O)([O-])OP([O-])(=O)[O-])C1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC=NC=23)))
  • common name:
    • IDP
  • inchi key:
    • InChIKey=JPXZQMKKFWMMGK-KQYNXXCUSA-K
  • molecular weight:
    • 425.165
  • Synonym(s):
    • riboxin
    • inosine diphosphate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 86-04-4
  • BIGG : idp
  • PUBCHEM:
  • HMDB : HMDB03335
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC58280
"C(OP(=O)([O-])OP([O-])(=O)[O-])C1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC=NC=23)))" cannot be used as a page name in this wiki.




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