Difference between revisions of "DUMP"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PANTOTHENATE-KIN-RXN PANTOTHENATE-KIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** panto...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DUMP DUMP] == * smiles: ** C(OP(=O)([O-])[O-])C1(OC(CC(O)1)N2(C=CC(=O)NC(=O)2)) * common name:...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PANTOTHENATE-KIN-RXN PANTOTHENATE-KIN-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DUMP DUMP] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C(OP(=O)([O-])[O-])C1(OC(CC(O)1)N2(C=CC(=O)NC(=O)2))
 
* common name:
 
* common name:
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** pantothenate_kinase_isoform_1
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** dUMP
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* ec number:
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* inchi key:
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** [http://enzyme.expasy.org/EC/2.7.1.33 EC-2.7.1.33]
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** InChIKey=JSRLJPSBLDHEIO-SHYZEUOFSA-L
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* molecular weight:
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** 306.168   
 
* Synonym(s):
 
* Synonym(s):
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** type III pantothenate kinase
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** deoxyurdine-phosphate
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** 2'-deoxyuridine 5-monophosphate
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** deoxyuridine-phosphate
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** 2'-deoxyuridine 5'-phosphate
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** 2'-deoxyuridylic acid
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** 2'-deoxy-5'-uridylic acid
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN-14143]]
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** 1 [[ATP]][c] '''+''' 1 [[PANTOTHENATE]][c] '''=>''' 1 [[4-P-PANTOTHENATE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
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* [[THYMIDYLATESYN-RXN]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 1 ATP[c] '''+''' 1 (R)-pantothenate[c] '''=>''' 1 (R)-4'-phosphopantothenate[c] '''+''' 1 ADP[c] '''+''' 1 H+[c]
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* [[RXN-14220]]
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* [[RXN-14199]]
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== Genes associated with this reaction  ==
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* [[DUTP-PYROP-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[DUTNH]]
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* [[Tiso_gene_4467]]
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* [[DCMP-DEAMINASE-RXN]]
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** IN-SILICO_ANNOTATION
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== Reaction(s) of unknown directionality ==
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***EC-NUMBER
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* [[Tiso_gene_4468]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PANTO-PWY]], phosphopantothenate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PANTO-PWY PANTO-PWY]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-3961]], phosphopantothenate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3961 PWY-3961]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[COA-PWY-1]], coenzyme A biosynthesis II (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=COA-PWY-1 COA-PWY-1]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* CAS : 964-26-1
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16373 16373]
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* BIGG : dump
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* LIGAND-RXN:
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* PUBCHEM:
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** [http://www.genome.jp/dbget-bin/www_bget?R03018 R03018]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=18601100 18601100]
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* UNIPROT:
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* HMDB : HMDB01409
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** [http://www.uniprot.org/uniprot/P0A6I3 P0A6I3]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/Q9CFM3 Q9CFM3]
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** [http://www.genome.jp/dbget-bin/www_bget?C00365 C00365]
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** [http://www.uniprot.org/uniprot/P44793 P44793]
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* CHEMSPIDER:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.chemspider.com/Chemical-Structure.18555972.html 18555972]
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{{#set: common name=pantothenate_kinase_isoform_1}}
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* CHEBI:
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{{#set: ec number=EC-2.7.1.33}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=246422 246422]
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{{#set: common name=type III pantothenate kinase}}
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* METABOLIGHTS : MTBLC246422
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{{#set: gene associated=Tiso_gene_4467|Tiso_gene_4468}}
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{{#set: smiles=C(OP(=O)([O-])[O-])C1(OC(CC(O)1)N2(C=CC(=O)NC(=O)2))}}
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{{#set: in pathway=PANTO-PWY|PWY-3961|COA-PWY-1}}
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{{#set: common name=dUMP}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: inchi key=InChIKey=JSRLJPSBLDHEIO-SHYZEUOFSA-L}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: molecular weight=306.168    }}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: common name=deoxyurdine-phosphate|2'-deoxyuridine 5-monophosphate|deoxyuridine-phosphate|2'-deoxyuridine 5'-phosphate|2'-deoxyuridylic acid|2'-deoxy-5'-uridylic acid}}
 +
{{#set: consumed by=RXN-14143|THYMIDYLATESYN-RXN}}
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{{#set: produced by=RXN-14220|RXN-14199|DUTP-PYROP-RXN|DUTNH|DCMP-DEAMINASE-RXN}}

Latest revision as of 20:52, 21 March 2018

Metabolite DUMP

  • smiles:
    • C(OP(=O)([O-])[O-])C1(OC(CC(O)1)N2(C=CC(=O)NC(=O)2))
  • common name:
    • dUMP
  • inchi key:
    • InChIKey=JSRLJPSBLDHEIO-SHYZEUOFSA-L
  • molecular weight:
    • 306.168
  • Synonym(s):
    • deoxyurdine-phosphate
    • 2'-deoxyuridine 5-monophosphate
    • deoxyuridine-phosphate
    • 2'-deoxyuridine 5'-phosphate
    • 2'-deoxyuridylic acid
    • 2'-deoxy-5'-uridylic acid

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 964-26-1
  • BIGG : dump
  • PUBCHEM:
  • HMDB : HMDB01409
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC246422
"C(OP(=O)([O-])[O-])C1(OC(CC(O)1)N2(C=CC(=O)NC(=O)2))" cannot be used as a page name in this wiki.




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