Difference between revisions of "TRYPTOPHAN--TRNA-LIGASE-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_17141 == * left end position: ** 461 * transcription direction: ** NEGATIVE * right end position: ** 3084 * centisome position: ** 6.504868...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPTOPHAN--TRNA-LIGASE-RXN TRYPTOPHAN--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_17141 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPTOPHAN--TRNA-LIGASE-RXN TRYPTOPHAN--TRNA-LIGASE-RXN] ==
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* left end position:
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* direction:
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** 461
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** tryptophan--trna_ligase
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* right end position:
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** tryptophan--trna_cytoplasmic
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** 3084
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/6.1.1.2 EC-6.1.1.2]
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** 6.504868   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[R03845]]
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* With identifiers:
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** [[pantograph]]-[[synechocystis]]
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** 1 [[TRP-tRNAs]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Charged-TRP-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
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* [[RXN-5285]]
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* With common name(s):
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** in-silico_annotation
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** 1 a tRNAtrp[c] '''+''' 1 L-tryptophan[c] '''+''' 1 ATP[c] '''=>''' 1 an L-tryptophanyl-[tRNAtrp][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
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***ec-number
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** experimental_annotation
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== Genes associated with this reaction  ==
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***ec-number
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Genes have been associated with this reaction based on different elements listed below.
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** [[pantograph]]-[[esiliculosus]]
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* Gene: [[Tiso_gene_14318]]
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* [[RXN1F-10]]
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** Source: [[annotation-in-silico_annotation]]
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** in-silico_annotation
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*** Assignment: EC-NUMBER
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***ec-number
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** Source: [[annotation-experimental_annotation]]
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** experimental_annotation
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*** Assignment: EC-NUMBER
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***ec-number
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* Gene: [[Tiso_gene_12988]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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== Pathways associated ==
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*** Assignment: EC-NUMBER
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* [[CHLOROPHYLL-SYN]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_14319]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=461}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24080 24080]
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{{#set: right end position=3084}}
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* LIGAND-RXN:
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{{#set: centisome position=6.504868    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R03664 R03664]
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{{#set: reaction associated=R03845|RXN-5285|RXN1F-10}}
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* UNIPROT:
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{{#set: pathway associated=CHLOROPHYLL-SYN}}
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** [http://www.uniprot.org/uniprot/P23381 P23381]
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** [http://www.uniprot.org/uniprot/Q9ZD76 Q9ZD76]
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** [http://www.uniprot.org/uniprot/O84589 O84589]
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** [http://www.uniprot.org/uniprot/Q9PIB4 Q9PIB4]
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** [http://www.uniprot.org/uniprot/Q9CJD1 Q9CJD1]
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** [http://www.uniprot.org/uniprot/P43835 P43835]
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** [http://www.uniprot.org/uniprot/Q9Z7A4 Q9Z7A4]
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** [http://www.uniprot.org/uniprot/Q9WYW2 Q9WYW2]
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** [http://www.uniprot.org/uniprot/O26352 O26352]
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** [http://www.uniprot.org/uniprot/O51038 O51038]
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** [http://www.uniprot.org/uniprot/Q9ZJX4 Q9ZJX4]
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** [http://www.uniprot.org/uniprot/Q9JTQ0 Q9JTQ0]
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** [http://www.uniprot.org/uniprot/Q58810 Q58810]
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** [http://www.uniprot.org/uniprot/O83640 O83640]
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** [http://www.uniprot.org/uniprot/P67590 P67590]
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** [http://www.uniprot.org/uniprot/O67115 O67115]
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** [http://www.uniprot.org/uniprot/P47372 P47372]
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** [http://www.uniprot.org/uniprot/P32921 P32921]
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** [http://www.uniprot.org/uniprot/Q12109 Q12109]
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** [http://www.uniprot.org/uniprot/Q49901 Q49901]
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** [http://www.uniprot.org/uniprot/P75510 P75510]
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** [http://www.uniprot.org/uniprot/O42875 O42875]
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** [http://www.uniprot.org/uniprot/O96771 O96771]
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** [http://www.uniprot.org/uniprot/P17248 P17248]
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** [http://www.uniprot.org/uniprot/P21656 P21656]
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** [http://www.uniprot.org/uniprot/P04803 P04803]
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** [http://www.uniprot.org/uniprot/P00954 P00954]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=tryptophan--trna_ligase}}
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{{#set: common name=tryptophan--trna_cytoplasmic}}
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{{#set: ec number=EC-6.1.1.2}}
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{{#set: gene associated=Tiso_gene_14318|Tiso_gene_12988|Tiso_gene_14319}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:53, 21 March 2018

Reaction TRYPTOPHAN--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • tryptophan--trna_ligase
    • tryptophan--trna_cytoplasmic
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a tRNAtrp[c] + 1 L-tryptophan[c] + 1 ATP[c] => 1 an L-tryptophanyl-[tRNAtrp][c] + 1 diphosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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