Difference between revisions of "TRYPTOPHAN--TRNA-LIGASE-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.24-RXN 3.2.1.24-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPTOPHAN--TRNA-LIGASE-RXN TRYPTOPHAN--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPTOPHAN--TRNA-LIGASE-RXN TRYPTOPHAN--TRNA-LIGASE-RXN] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
+ | * common name: | ||
+ | ** tryptophan--trna_ligase | ||
+ | ** tryptophan--trna_cytoplasmic | ||
* ec number: | * ec number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/6.1.1.2 EC-6.1.1.2] |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[ | + | ** 1 [[TRP-tRNAs]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Charged-TRP-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 | + | ** 1 a tRNAtrp[c] '''+''' 1 L-tryptophan[c] '''+''' 1 ATP[c] '''=>''' 1 an L-tryptophanyl-[tRNAtrp][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | * [[ | + | * Gene: [[Tiso_gene_14318]] |
− | ** [[ | + | ** Source: [[annotation-in-silico_annotation]] |
+ | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[annotation-experimental_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | * Gene: [[Tiso_gene_12988]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[annotation-experimental_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[orthology-esiliculosus]] | ||
+ | * Gene: [[Tiso_gene_14319]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
== Pathways == | == Pathways == | ||
+ | * [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY] | ||
+ | ** '''21''' reactions found over '''21''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * [[orthology]]: | + | * Category: [[orthology]] |
− | ** [[pantograph]]: | + | ** Source: [[orthology-esiliculosus]] |
− | *** [[ | + | *** Tool: [[pantograph]] |
+ | * Category: [[annotation]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
+ | ** Source: [[annotation-experimental_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24080 24080] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R03664 R03664] | ||
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P23381 P23381] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9ZD76 Q9ZD76] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/O84589 O84589] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9PIB4 Q9PIB4] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9CJD1 Q9CJD1] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P43835 P43835] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9Z7A4 Q9Z7A4] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9WYW2 Q9WYW2] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/O26352 O26352] |
+ | ** [http://www.uniprot.org/uniprot/O51038 O51038] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZJX4 Q9ZJX4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTQ0 Q9JTQ0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58810 Q58810] | ||
+ | ** [http://www.uniprot.org/uniprot/O83640 O83640] | ||
+ | ** [http://www.uniprot.org/uniprot/P67590 P67590] | ||
+ | ** [http://www.uniprot.org/uniprot/O67115 O67115] | ||
+ | ** [http://www.uniprot.org/uniprot/P47372 P47372] | ||
+ | ** [http://www.uniprot.org/uniprot/P32921 P32921] | ||
+ | ** [http://www.uniprot.org/uniprot/Q12109 Q12109] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49901 Q49901] | ||
+ | ** [http://www.uniprot.org/uniprot/P75510 P75510] | ||
+ | ** [http://www.uniprot.org/uniprot/O42875 O42875] | ||
+ | ** [http://www.uniprot.org/uniprot/O96771 O96771] | ||
+ | ** [http://www.uniprot.org/uniprot/P17248 P17248] | ||
+ | ** [http://www.uniprot.org/uniprot/P21656 P21656] | ||
+ | ** [http://www.uniprot.org/uniprot/P04803 P04803] | ||
+ | ** [http://www.uniprot.org/uniprot/P00954 P00954] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
− | {{#set: ec number=EC- | + | {{#set: common name=tryptophan--trna_ligase}} |
− | {{#set: gene associated= | + | {{#set: common name=tryptophan--trna_cytoplasmic}} |
− | {{#set: in pathway=}} | + | {{#set: ec number=EC-6.1.1.2}} |
− | {{#set: reconstruction category=orthology}} | + | {{#set: gene associated=Tiso_gene_14318|Tiso_gene_12988|Tiso_gene_14319}} |
− | {{#set: reconstruction | + | {{#set: in pathway=TRNA-CHARGING-PWY}} |
− | {{#set: reconstruction | + | {{#set: reconstruction category=orthology|annotation}} |
+ | {{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Latest revision as of 19:53, 21 March 2018
Contents
Reaction TRYPTOPHAN--TRNA-LIGASE-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- tryptophan--trna_ligase
- tryptophan--trna_cytoplasmic
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1 a tRNAtrp[c] + 1 L-tryptophan[c] + 1 ATP[c] => 1 an L-tryptophanyl-[tRNAtrp][c] + 1 diphosphate[c] + 1 AMP[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_14318
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-experimental_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_12988
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-experimental_annotation
- Assignment: EC-NUMBER
- Source: orthology-esiliculosus
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_14319
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
Pathways
- TRNA-CHARGING-PWY, tRNA charging: TRNA-CHARGING-PWY
- 21 reactions found over 21 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-esiliculosus
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-experimental_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: