Difference between revisions of "TRYPTOPHAN--TRNA-LIGASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.24-RXN 3.2.1.24-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPTOPHAN--TRNA-LIGASE-RXN TRYPTOPHAN--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.24-RXN 3.2.1.24-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPTOPHAN--TRNA-LIGASE-RXN TRYPTOPHAN--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** tryptophan--trna_ligase
 +
** tryptophan--trna_cytoplasmic
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.2.1.24 EC-3.2.1.24]
+
** [http://enzyme.expasy.org/EC/6.1.1.2 EC-6.1.1.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Alpha-D-Mannosides]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Non-Glycosylated-sugar-Acceptors]][c] '''+''' 1 [[CPD-13559]][c]
+
** 1 [[TRP-tRNAs]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Charged-TRP-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 an α-D-mannoside[c] '''+''' 1 H2O[c] '''=>''' 1 a non glycosylated sugar acceptor[c] '''+''' 1 α-D-mannopyranose[c]
+
** 1 a tRNAtrp[c] '''+''' 1 L-tryptophan[c] '''+''' 1 ATP[c] '''=>''' 1 an L-tryptophanyl-[tRNAtrp][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_6748]]
+
* Gene: [[Tiso_gene_14318]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12988]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14319]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24080 24080]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03664 R03664]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P21139 P21139]
+
** [http://www.uniprot.org/uniprot/P23381 P23381]
−
** [http://www.uniprot.org/uniprot/P34098 P34098]
+
** [http://www.uniprot.org/uniprot/Q9ZD76 Q9ZD76]
−
** [http://www.uniprot.org/uniprot/P39098 P39098]
+
** [http://www.uniprot.org/uniprot/O84589 O84589]
−
** [http://www.uniprot.org/uniprot/P22855 P22855]
+
** [http://www.uniprot.org/uniprot/Q9PIB4 Q9PIB4]
−
** [http://www.uniprot.org/uniprot/Q43249 Q43249]
+
** [http://www.uniprot.org/uniprot/Q9CJD1 Q9CJD1]
−
** [http://www.uniprot.org/uniprot/O13344 O13344]
+
** [http://www.uniprot.org/uniprot/P43835 P43835]
−
** [http://www.uniprot.org/uniprot/O46432 O46432]
+
** [http://www.uniprot.org/uniprot/Q9Z7A4 Q9Z7A4]
−
** [http://www.uniprot.org/uniprot/O09159 O09159]
+
** [http://www.uniprot.org/uniprot/Q9WYW2 Q9WYW2]
−
** [http://www.uniprot.org/uniprot/Q9NTJ4 Q9NTJ4]
+
** [http://www.uniprot.org/uniprot/O26352 O26352]
 +
** [http://www.uniprot.org/uniprot/O51038 O51038]
 +
** [http://www.uniprot.org/uniprot/Q9ZJX4 Q9ZJX4]
 +
** [http://www.uniprot.org/uniprot/Q9JTQ0 Q9JTQ0]
 +
** [http://www.uniprot.org/uniprot/Q58810 Q58810]
 +
** [http://www.uniprot.org/uniprot/O83640 O83640]
 +
** [http://www.uniprot.org/uniprot/P67590 P67590]
 +
** [http://www.uniprot.org/uniprot/O67115 O67115]
 +
** [http://www.uniprot.org/uniprot/P47372 P47372]
 +
** [http://www.uniprot.org/uniprot/P32921 P32921]
 +
** [http://www.uniprot.org/uniprot/Q12109 Q12109]
 +
** [http://www.uniprot.org/uniprot/Q49901 Q49901]
 +
** [http://www.uniprot.org/uniprot/P75510 P75510]
 +
** [http://www.uniprot.org/uniprot/O42875 O42875]
 +
** [http://www.uniprot.org/uniprot/O96771 O96771]
 +
** [http://www.uniprot.org/uniprot/P17248 P17248]
 +
** [http://www.uniprot.org/uniprot/P21656 P21656]
 +
** [http://www.uniprot.org/uniprot/P04803 P04803]
 +
** [http://www.uniprot.org/uniprot/P00954 P00954]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-3.2.1.24}}
+
{{#set: common name=tryptophan--trna_ligase}}
−
{{#set: gene associated=Tiso_gene_6748}}
+
{{#set: common name=tryptophan--trna_cytoplasmic}}
−
{{#set: in pathway=}}
+
{{#set: ec number=EC-6.1.1.2}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: gene associated=Tiso_gene_14318|Tiso_gene_12988|Tiso_gene_14319}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: in pathway=TRNA-CHARGING-PWY}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:53, 21 March 2018

Reaction TRYPTOPHAN--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • tryptophan--trna_ligase
    • tryptophan--trna_cytoplasmic
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a tRNAtrp[c] + 1 L-tryptophan[c] + 1 ATP[c] => 1 an L-tryptophanyl-[tRNAtrp][c] + 1 diphosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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