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| Line 1: |
Line 1: |
| − | [[Category:Reaction]] | + | [[Category:Gene]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTDEHYD-RXN GLUTDEHYD-RXN] == | + | == Gene Tiso_gene_16467 == |
| − | * direction: | + | * right end position: |
| − | ** REVERSIBLE | + | ** 4070 |
| − | * common name: | + | * transcription direction: |
| − | ** ferredoxin-dependent_glutamate_fusion_of_large_and_small_subunits | + | ** POSITIVE |
| − | ** glutamate_synthase | + | * left end position: |
| − | * ec number: | + | ** 1876 |
| − | ** [http://enzyme.expasy.org/EC/1.4.1.4 EC-1.4.1.4] | + | * centisome position: |
| | + | ** 43.176064 |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reactions associated == |
| − | * With identifiers: | + | * Reaction: [[PHENYLALANINE--TRNA-LIGASE-RXN]] |
| − | ** 1 [[WATER]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[NADPH]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[AMMONIUM]][c]
| + | |
| − | * With common name(s):
| + | |
| − | ** 1 H2O[c] '''+''' 1 L-glutamate[c] '''+''' 1 NADP+[c] '''<=>''' 1 NADPH[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 H+[c] '''+''' 1 ammonium[c]
| + | |
| − | | + | |
| − | == Genes associated with this reaction ==
| + | |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | |
| − | * Gene: [[Tiso_gene_2581]]
| + | |
| | ** Source: [[annotation-in-silico_annotation]] | | ** Source: [[annotation-in-silico_annotation]] |
| − | *** Assignment: EC-NUMBER | + | *** Assignment: ec-number |
| | ** Source: [[annotation-experimental_annotation]] | | ** Source: [[annotation-experimental_annotation]] |
| − | *** Assignment: EC-NUMBER | + | *** Assignment: ec-number |
| − | * Gene: [[Tiso_gene_1154]]
| + | ** Source: [[orthology-esiliculosus]] |
| − | ** Source: [[annotation-in-silico_annotation]] | + | == Pathways associated == |
| − | *** Assignment: EC-NUMBER
| + | * [[TRNA-CHARGING-PWY]] |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | * Gene: [[Tiso_gene_11511]]
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | == Pathways == | + | |
| − | * [[GLUTSYNIII-PWY]], L-glutamate biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=GLUTSYNIII-PWY GLUTSYNIII-PWY] | + | |
| − | ** '''1''' reactions found over '''1''' reactions in the full pathway
| + | |
| − | * [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
| + | |
| − | ** '''9''' reactions found over '''11''' reactions in the full pathway
| + | |
| − | * [[PWY-5675]], nitrate reduction V (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5675 PWY-5675]
| + | |
| − | ** '''2''' reactions found over '''4''' reactions in the full pathway
| + | |
| − | * [[PWY490-3]], nitrate reduction VI (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY490-3 PWY490-3]
| + | |
| − | ** '''3''' reactions found over '''4''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * Category: [[manual]]
| + | |
| − | ** Source: [[manual-primary_network]]
| + | |
| − | * Category: [[annotation]]
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Tool: [[pathwaytools]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Tool: [[pathwaytools]]
| + | |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: right end position=4070}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11612 11612]
| + | {{#set: transcription direction=POSITIVE}} |
| − | * LIGAND-RXN:
| + | {{#set: left end position=1876}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00248 R00248]
| + | {{#set: centisome position=43.176064 }} |
| − | * UNIPROT:
| + | {{#set: reaction associated=PHENYLALANINE--TRNA-LIGASE-RXN}} |
| − | ** [http://www.uniprot.org/uniprot/P07262 P07262]
| + | {{#set: pathway associated=TRNA-CHARGING-PWY}} |
| − | ** [http://www.uniprot.org/uniprot/P15111 P15111]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P28724 P28724]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P43793 P43793]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9JT56 Q9JT56]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P00370 P00370]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P00369 P00369]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P29507 P29507]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P28998 P28998]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P29051 P29051]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P31026 P31026]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P39475 P39475]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P39708 P39708]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P54387 P54387]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P54386 P54386]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P95544 P95544]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P78804 P78804]
| + | |
| − | {{#set: direction=REVERSIBLE}} | + | |
| − | {{#set: common name=ferredoxin-dependent_glutamate_fusion_of_large_and_small_subunits}} | + | |
| − | {{#set: common name=glutamate_synthase}} | + | |
| − | {{#set: ec number=EC-1.4.1.4}} | + | |
| − | {{#set: gene associated=Tiso_gene_2581|Tiso_gene_1154|Tiso_gene_11511}} | + | |
| − | {{#set: in pathway=GLUTSYNIII-PWY|PWY-5913|PWY-5675|PWY490-3}}
| + | |
| − | {{#set: reconstruction category=manual|annotation}} | + | |
| − | {{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation}}
| + | |
| − | {{#set: reconstruction tool=pathwaytools}}
| + | |
