Difference between revisions of "RXN-12399"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=MPBQ MPBQ] == * smiles: ** CC(CCCC(CCCC(C)CCCC(C)=CCC1(C=C(O)C=C(C)C(O)=1))C)C * common name: *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12399 RXN-12399] == * direction: ** LEFT-TO-RIGHT * common name: ** xyloglucan XLXG oligosaccha...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=MPBQ MPBQ] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12399 RXN-12399] ==
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* smiles:
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* direction:
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** CC(CCCC(CCCC(C)CCCC(C)=CCC1(C=C(O)C=C(C)C(O)=1))C)C
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** 2-methyl-6-phytyl-1,4-benzoquinol
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** xyloglucan XLXG oligosaccharide β-galactosidase
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* inchi key:
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** glycoside_hydrolase
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** InChIKey=GTWCNYRFOZKWTL-UOFXASEASA-N
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** polyprotein
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* molecular weight:
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* ec number:
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** 402.659   
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** [http://enzyme.expasy.org/EC/3.2.1.23 EC-3.2.1.23]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-2542]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[WATER]][c] '''+''' 1 [[CPD-13377]][c] '''=>''' 1 [[CPD-13375]][c] '''+''' 1 [[D-galactopyranose]][c]
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* [[RXN-2541]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 H2O[c] '''+''' 1 XLXG xyloglucan oligosaccharide[c] '''=>''' 1 XXXG xyloglucan oligosaccharide[c] '''+''' 1 D-galactopyranose[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_12839]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_17558]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_1398]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-6807]], xyloglucan degradation II (exoglucanase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6807 PWY-6807]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* LIGAND-CPD:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.genome.jp/dbget-bin/www_bget?C15882 C15882]
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{{#set: common name=xyloglucan XLXG oligosaccharide β-galactosidase}}
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* HMDB : HMDB38959
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{{#set: common name=glycoside_hydrolase}}
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* CHEBI:
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{{#set: common name=polyprotein}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=75920 75920]
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{{#set: ec number=EC-3.2.1.23}}
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* METABOLIGHTS : MTBLC75920
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{{#set: gene associated=Tiso_gene_12839|Tiso_gene_17558|Tiso_gene_1398}}
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* PUBCHEM:
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{{#set: in pathway=PWY-6807}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=71768135 71768135]
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: smiles=CC(CCCC(CCCC(C)CCCC(C)=CCC1(C=C(O)C=C(C)C(O)=1))C)C}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: common name=2-methyl-6-phytyl-1,4-benzoquinol}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: inchi key=InChIKey=GTWCNYRFOZKWTL-UOFXASEASA-N}}
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{{#set: molecular weight=402.659    }}
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{{#set: consumed by=RXN-2542}}
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{{#set: produced by=RXN-2541}}
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Latest revision as of 20:53, 21 March 2018

Reaction RXN-12399

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • xyloglucan XLXG oligosaccharide β-galactosidase
    • glycoside_hydrolase
    • polyprotein
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 XLXG xyloglucan oligosaccharide[c] => 1 XXXG xyloglucan oligosaccharide[c] + 1 D-galactopyranose[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6807, xyloglucan degradation II (exoglucanase): PWY-6807
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12399&oldid=44437"