Difference between revisions of "Tiso gene 18330"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14803 RXN-14803] == * direction: ** LEFT-TO-RIGHT * common name: ** thiolase ** acetyl-_c-acety...")
 
(Created page with "Category:Gene == Gene Tiso_gene_18330 == * right end position: ** 3062 * transcription direction: ** POSITIVE * left end position: ** 2238 * centisome position: ** 72.4740...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14803 RXN-14803] ==
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== Gene Tiso_gene_18330 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3062
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* common name:
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* transcription direction:
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** thiolase
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** POSITIVE
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** acetyl-_c-acetyltransferase
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* left end position:
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** 3-ketoacyl-_thiolase
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** 2238
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
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** 72.47409   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1.10.2.2-RXN]]
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** 1 [[CO-A]][c] '''+''' 1 [[CPD-15691]][c] '''=>''' 1 [[CPD-15692]][c] '''+''' 1 [[ACETYL-COA]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 coenzyme A[c] '''+''' 1 5-trans-3-oxo-dodecenoyl-CoA[c] '''=>''' 1 3-trans-decenoyl-CoA[c] '''+''' 1 acetyl-CoA[c]
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* Reaction: [[RXN-14107]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-15816]]
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* [[Tiso_gene_17451]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***EC-NUMBER
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* Reaction: [[RXN-15829]]
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** EXPERIMENTAL_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: automated-name-match
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* [[Tiso_gene_15327]]
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== Pathways associated ==
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** EXPERIMENTAL_ANNOTATION
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* [[PWY-3781]]
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***EC-NUMBER
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* [[PWY-6692]]
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* [[Tiso_gene_10116]]
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* [[PWY-7279]]
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** IN-SILICO_ANNOTATION
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* [[PWY-7082]]
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3855]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3856]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways ==
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* [[PWY-7340]], 9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7340 PWY-7340]
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** '''3''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=3062}}
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{{#set: common name=thiolase}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=acetyl-_c-acetyltransferase}}
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{{#set: left end position=2238}}
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{{#set: common name=3-ketoacyl-_thiolase}}
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{{#set: centisome position=72.47409    }}
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{{#set: ec number=EC-2.3.1.16}}
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{{#set: reaction associated=1.10.2.2-RXN|RXN-14107|RXN-15816|RXN-15829}}
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{{#set: gene associated=Tiso_gene_17451|Tiso_gene_15327|Tiso_gene_10116|Tiso_gene_3855|Tiso_gene_3856}}
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{{#set: pathway associated=PWY-3781|PWY-6692|PWY-7279|PWY-7082}}
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{{#set: in pathway=PWY-7340}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:53, 21 March 2018

Gene Tiso_gene_18330

  • right end position:
    • 3062
  • transcription direction:
    • POSITIVE
  • left end position:
    • 2238
  • centisome position:
    • 72.47409
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_18330&oldid=44468"