Difference between revisions of "RXN-5283"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9534 RXN-9534] == * direction: ** LEFT-TO-RIGHT * common name: ** trans dodec-2-enoyl-[acyl-car...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5283 RXN-5283] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With id...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9534 RXN-9534] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5283 RXN-5283] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** trans dodec-2-enoyl-[acyl-carrier protein] reductase (NADPH, B-specific)
 
−
** polyketide_synthase
 
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/1.3.1.10 EC-1.3.1.10]
 
−
** [http://enzyme.expasy.org/EC/1.3.1.39 EC-1.3.1.39]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Dodec-2-enoyl-ACPs]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[Dodecanoyl-ACPs]][c]
+
** 1 [[NADPH]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[13-HYDROXY-MAGNESIUM-PROTOPORP]][c] '''=>''' 1 [[131-OXO-MAGNESIUM-PROTOPORPHYRIN-IX-13-M]][c] '''+''' 1 [[NADP]][c] '''+''' 2 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a (2E)-dodec-2-enoyl-[acp][c] '''+''' 1 NADPH[c] '''+''' 1 H+[c] '''=>''' 1 NADP+[c] '''+''' 1 a dodecanoyl-[acp][c]
+
** 1 NADPH[c] '''+''' 1 oxygen[c] '''+''' 1 H+[c] '''+''' 1 131-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester[c] '''=>''' 1 131-oxo-magnesium-protoporphyrin IX 13-monomethyl ester[c] '''+''' 1 NADP+[c] '''+''' 2 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* Gene: [[Tiso_gene_500]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Tiso_gene_136]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Tiso_gene_10778]]
 
−
** Source: [[orthology-synechocystis]]
 
−
* Gene: [[Tiso_gene_135]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Tiso_gene_10876]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Tiso_gene_13394]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
+
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[manual]]
 
* Category: [[manual]]
 
** Source: [[manual-primary_network]]
 
** Source: [[manual-primary_network]]
−
* Category: [[annotation]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20542 20542]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R06266 R06266]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=trans dodec-2-enoyl-[acyl-carrier protein] reductase (NADPH, B-specific)}}
+
{{#set: in pathway=CHLOROPHYLL-SYN|PWY-7159}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: reconstruction category=manual}}
−
{{#set: ec number=EC-1.3.1.10}}
+
{{#set: reconstruction source=manual-primary_network}}
−
{{#set: ec number=EC-1.3.1.39}}
+
−
{{#set: ec number=EC-2.3.1.85}}
+
−
{{#set: ec number=EC-2.3.1.86}}
+
−
{{#set: gene associated=Tiso_gene_500|Tiso_gene_136|Tiso_gene_10778|Tiso_gene_135|Tiso_gene_10876|Tiso_gene_13394}}
+
−
{{#set: in pathway=PWY-5994}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation|orthology-synechocystis}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:54, 21 March 2018

Reaction RXN-5283

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Pathways

  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): CHLOROPHYLL-SYN
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): PWY-7159
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links



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