Difference between revisions of "RXN-11501"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RME297 RME297] == * direction: ** REVERSIBLE * common name: ** RME297 * Synonym(s): == Reaction Fo...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11501 RXN-11501] == * direction: ** LEFT-TO-RIGHT * common name: ** alpha-galactosidase * ec nu...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11501 RXN-11501] == |
* direction: | * direction: | ||
| − | ** | + | ** LEFT-TO-RIGHT |
* common name: | * common name: | ||
| − | ** | + | ** alpha-galactosidase |
| + | * ec number: | ||
| + | ** [http://enzyme.expasy.org/EC/3.2.1.22 EC-3.2.1.22] | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 | + | ** 1 [[WATER]][c] '''+''' 1 [[CPD-170]][c] '''=>''' 1 [[ALPHA-D-GALACTOSE]][c] '''+''' 1 [[CPD-1099]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 H2O[c] '''+''' 1 stachyose[c] '''=>''' 1 α-D-galactose[c] '''+''' 1 raffinose[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
| + | Genes have been associated with this reaction based on different elements listed below. | ||
| + | * Gene: [[Tiso_gene_16101]] | ||
| + | ** Source: [[orthology-esiliculosus]] | ||
| + | ** Source: [[orthology-creinhardtii]] | ||
| + | * Gene: [[Tiso_gene_4615]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Assignment: AUTOMATED-NAME-MATCH | ||
| + | ** Source: [[orthology-creinhardtii]] | ||
| + | * Gene: [[Tiso_gene_8673]] | ||
| + | ** Source: [[orthology-esiliculosus]] | ||
| + | ** Source: [[orthology-creinhardtii]] | ||
| + | * Gene: [[Tiso_gene_3392]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Assignment: AUTOMATED-NAME-MATCH | ||
| + | ** Source: [[orthology-athaliana]] | ||
== Pathways == | == Pathways == | ||
| + | * [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527] | ||
| + | ** '''7''' reactions found over '''7''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| − | * [[ | + | * Category: [[orthology]] |
| − | ** [[ | + | ** Source: [[orthology-athaliana]] |
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-creinhardtii]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-esiliculosus]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | * Category: [[annotation]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| − | {{#set: direction= | + | * LIGAND-RXN: |
| − | {{#set: common name= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R03634 R03634] |
| − | {{#set: in pathway=}} | + | {{#set: direction=LEFT-TO-RIGHT}} |
| − | {{#set: reconstruction category= | + | {{#set: common name=alpha-galactosidase}} |
| − | {{#set: reconstruction source= | + | {{#set: ec number=EC-3.2.1.22}} |
| + | {{#set: gene associated=Tiso_gene_16101|Tiso_gene_4615|Tiso_gene_8673|Tiso_gene_3392}} | ||
| + | {{#set: in pathway=PWY-6527}} | ||
| + | {{#set: reconstruction category=orthology|annotation}} | ||
| + | {{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|orthology-creinhardtii|orthology-esiliculosus}} | ||
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 20:54, 21 March 2018
Contents
Reaction RXN-11501
- direction:
- LEFT-TO-RIGHT
- common name:
- alpha-galactosidase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 WATER[c] + 1 CPD-170[c] => 1 ALPHA-D-GALACTOSE[c] + 1 CPD-1099[c]
- With common name(s):
- 1 H2O[c] + 1 stachyose[c] => 1 α-D-galactose[c] + 1 raffinose[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_16101
- Source: orthology-esiliculosus
- Source: orthology-creinhardtii
- Gene: Tiso_gene_4615
- Source: annotation-in-silico_annotation
- Assignment: AUTOMATED-NAME-MATCH
- Source: orthology-creinhardtii
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_8673
- Source: orthology-esiliculosus
- Source: orthology-creinhardtii
- Gene: Tiso_gene_3392
- Source: annotation-in-silico_annotation
- Assignment: AUTOMATED-NAME-MATCH
- Source: orthology-athaliana
- Source: annotation-in-silico_annotation
Pathways
Reconstruction information
- Category: orthology
- Source: orthology-athaliana
- Tool: pantograph
- Source: orthology-creinhardtii
- Tool: pantograph
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-athaliana
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
- LIGAND-RXN:
