Difference between revisions of "RXN-10059"

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(Created page with "Category:Gene == Gene Tiso_gene_6106 == * left end position: ** 185 * transcription direction: ** NEGATIVE * right end position: ** 2128 * centisome position: ** 1.287942...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10059 RXN-10059] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxoacyl-synthase * ec num...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_6106 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10059 RXN-10059] ==
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* left end position:
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* direction:
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** 185
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** 3-oxoacyl-synthase
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* right end position:
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* ec number:
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** 2128
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** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
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* centisome position:
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** 1.287942   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[PNKIN-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[PROTON]][c] '''+''' 1 [[MALONYL-COA]][c] '''+''' 1 [[Lignoceroyl-ACPs]][c] '''=>''' 1 [[3-oxo-cerotoyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c]
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***automated-name-match
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* With common name(s):
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** [[pantograph]]-[[athaliana]]
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** 1 H+[c] '''+''' 1 malonyl-CoA[c] '''+''' 1 a lignoceroyl-[acp][c] '''=>''' 1 a 3-oxo-cerotoyl-[acp][c] '''+''' 1 CO2[c] '''+''' 1 coenzyme A[c]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Genes associated with this reaction  ==
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* [[PYRAMKIN-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** in-silico_annotation
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* Gene: [[Tiso_gene_15991]]
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***automated-name-match
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[athaliana]]
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* Gene: [[Tiso_gene_19302]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* Gene: [[Tiso_gene_14485]]
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* [[PYRIDOXKIN-RXN]]
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** Source: [[orthology-esiliculosus]]
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** in-silico_annotation
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* Gene: [[Tiso_gene_5939]]
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***automated-name-match
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** Assignment: EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** Assignment: EC-NUMBER
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== Pathways associated ==
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== Pathways  ==
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* [[PWY-7204]]
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* [[PWY-6113]], superpathway of mycolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6113 PWY-6113]
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* [[PWY-7282]]
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** '''8''' reactions found over '''12''' reactions in the full pathway
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* [[PLPSAL-PWY]]
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* [[PWYG-321]], mycolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWYG-321 PWYG-321]
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** '''86''' reactions found over '''182''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=185}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=3-oxoacyl-synthase}}
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{{#set: right end position=2128}}
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{{#set: ec number=EC-2.3.1.41}}
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{{#set: centisome position=1.287942    }}
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{{#set: gene associated=Tiso_gene_15991|Tiso_gene_19302|Tiso_gene_14485|Tiso_gene_5939}}
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{{#set: reaction associated=PNKIN-RXN|PYRAMKIN-RXN|PYRIDOXKIN-RXN}}
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{{#set: in pathway=PWY-6113|PWYG-321}}
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{{#set: pathway associated=PWY-7204|PWY-7282|PLPSAL-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:54, 21 March 2018

Reaction RXN-10059

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-oxoacyl-synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6113, superpathway of mycolate biosynthesis: PWY-6113
    • 8 reactions found over 12 reactions in the full pathway
  • PWYG-321, mycolate biosynthesis: PWYG-321
    • 86 reactions found over 182 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-10059&oldid=44540"