Difference between revisions of "IGPSYN-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_11659 == * left end position: ** 103 * transcription direction: ** POSITIVE * right end position: ** 7408 * centisome position: ** 1.349227...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** indole3-glycerol_phosphat...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_11659 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] ==
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* left end position:
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* direction:
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** 103
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** indole3-glycerol_phosphate_synthase
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* right end position:
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* ec number:
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** 7408
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** [http://enzyme.expasy.org/EC/4.1.1.48 EC-4.1.1.48]
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* centisome position:
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** 1.3492272   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[H2PTERIDINEPYROPHOSPHOKIN-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[PROTON]][c] '''+''' 1 [[CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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***ec-number
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* With common name(s):
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** [[pantograph]]-[[athaliana]]
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** 1 H+[c] '''+''' 1 1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate[c] '''=>''' 1 H2O[c] '''+''' 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''+''' 1 CO2[c]
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** [[pantograph]]-[[esiliculosus]]
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* [[H2PTEROATESYNTH-RXN]]
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== Genes associated with this reaction  ==
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** in-silico_annotation
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Genes have been associated with this reaction based on different elements listed below.
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***ec-number
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* Gene: [[Tiso_gene_10298]]
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** [[pantograph]]-[[athaliana]]
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** Source: [[orthology-athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** Source: [[orthology-synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* Gene: [[Tiso_gene_10297]]
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* [[R00939]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[synechocystis]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[RXN-14226]]
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** Source: [[orthology-athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** Source: [[orthology-synechocystis]]
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* [[RXN-15733]]
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** Source: [[orthology-esiliculosus]]
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** in-silico_annotation
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* Gene: [[Tiso_gene_18384]]
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***ec-number
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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* Gene: [[Tiso_gene_4521]]
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== Pathways associated ==
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** Source: [[orthology-esiliculosus]]
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* [[PWY-6148]]
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** Source: [[orthology-creinhardtii]]
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* [[PWY-7539]]
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== Pathways  ==
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* [[PWY-6614]]
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* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
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* [[PWY-6797]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6147]]
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=103}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23476 23476]
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{{#set: right end position=7408}}
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* LIGAND-RXN:
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{{#set: centisome position=1.3492272    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R03508 R03508]
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{{#set: reaction associated=H2PTERIDINEPYROPHOSPHOKIN-RXN|H2PTEROATESYNTH-RXN|R00939|RXN-14226|RXN-15733}}
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* UNIPROT:
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{{#set: pathway associated=PWY-6148|PWY-7539|PWY-6614|PWY-6797|PWY-6147}}
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** [http://www.uniprot.org/uniprot/P42393 P42393]
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** [http://www.uniprot.org/uniprot/P20577 P20577]
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** [http://www.uniprot.org/uniprot/P18304 P18304]
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** [http://www.uniprot.org/uniprot/Q06121 Q06121]
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** [http://www.uniprot.org/uniprot/Q9V1G3 Q9V1G3]
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** [http://www.uniprot.org/uniprot/P20578 P20578]
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** [http://www.uniprot.org/uniprot/Q9PI11 Q9PI11]
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** [http://www.uniprot.org/uniprot/Q58328 Q58328]
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** [http://www.uniprot.org/uniprot/Q9JSN4 Q9JSN4]
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** [http://www.uniprot.org/uniprot/P03964 P03964]
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** [http://www.uniprot.org/uniprot/P00910 P00910]
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** [http://www.uniprot.org/uniprot/P00909 P00909]
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** [http://www.uniprot.org/uniprot/P00911 P00911]
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** [http://www.uniprot.org/uniprot/P17217 P17217]
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** [http://www.uniprot.org/uniprot/P20409 P20409]
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** [http://www.uniprot.org/uniprot/P00937 P00937]
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** [http://www.uniprot.org/uniprot/P00908 P00908]
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** [http://www.uniprot.org/uniprot/P05328 P05328]
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** [http://www.uniprot.org/uniprot/P06531 P06531]
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** [http://www.uniprot.org/uniprot/P18483 P18483]
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** [http://www.uniprot.org/uniprot/P25170 P25170]
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** [http://www.uniprot.org/uniprot/P26938 P26938]
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** [http://www.uniprot.org/uniprot/P24773 P24773]
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** [http://www.uniprot.org/uniprot/Q01999 Q01999]
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** [http://www.uniprot.org/uniprot/Q9YGB5 Q9YGB5]
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** [http://www.uniprot.org/uniprot/Q9S591 Q9S591]
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** [http://www.uniprot.org/uniprot/Q9X7C7 Q9X7C7]
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** [http://www.uniprot.org/uniprot/Q92370 Q92370]
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** [http://www.uniprot.org/uniprot/Q9ZFA7 Q9ZFA7]
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** [http://www.uniprot.org/uniprot/P94327 P94327]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=indole3-glycerol_phosphate_synthase}}
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{{#set: ec number=EC-4.1.1.48}}
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{{#set: gene associated=Tiso_gene_10298|Tiso_gene_10297|Tiso_gene_18384|Tiso_gene_4521}}
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{{#set: in pathway=TRPSYN-PWY}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:54, 21 March 2018

Reaction IGPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • indole3-glycerol_phosphate_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • TRPSYN-PWY, L-tryptophan biosynthesis: TRPSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=IGPSYN-RXN&oldid=44549"