Difference between revisions of "Tiso gene 9915"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1TRANSKETO-RXN 1TRANSKETO-RXN] == * direction: ** REVERSIBLE * common name: ** transketolase * ec n...")
 
(Created page with "Category:Gene == Gene Tiso_gene_9915 == * right end position: ** 8810 * transcription direction: ** POSITIVE * left end position: ** 3292 * centisome position: ** 36.67149...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1TRANSKETO-RXN 1TRANSKETO-RXN] ==
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== Gene Tiso_gene_9915 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 8810
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* common name:
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* transcription direction:
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** transketolase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.2.1.1 EC-2.2.1.1]
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** 3292
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* centisome position:
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** 36.671494   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ADPREDUCT-RXN]]
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** 1 [[GAP]][c] '''+''' 1 [[D-SEDOHEPTULOSE-7-P]][c] '''<=>''' 1 [[XYLULOSE-5-PHOSPHATE]][c] '''+''' 1 [[RIBOSE-5P]][c]
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** Source: [[annotation-experimental_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 D-sedoheptulose 7-phosphate[c] '''<=>''' 1 D-xylulose 5-phosphate[c] '''+''' 1 D-ribose 5-phosphate[c]
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* Reaction: [[CDPREDUCT-RXN]]
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** Source: [[annotation-experimental_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[GDPREDUCT-RXN]]
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* [[Tiso_gene_5008]]
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** Source: [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RIBONUCLEOSIDE-DIP-REDUCTI-RXN]]
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** EXPERIMENTAL_ANNOTATION
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** Source: [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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** [[pantograph]]-[[athaliana]]
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* Reaction: [[RIBONUCLEOSIDE-DIP-REDUCTII-RXN]]
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** [[pantograph]]-[[athaliana]]
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** Source: [[annotation-experimental_annotation]]
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** [[pantograph]]-[[synechocystis]]
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*** Assignment: ec-number
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* [[Tiso_gene_11559]]
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* Reaction: [[RXN0-722]]
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** EXPERIMENTAL_ANNOTATION
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** Source: [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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== Pathways  ==
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* Reaction: [[RXN0-747]]
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* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
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** Source: [[annotation-experimental_annotation]]
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** '''11''' reactions found over '''15''' reactions in the full pathway
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*** Assignment: ec-number
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* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
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* Reaction: [[RXN0-748]]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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** Source: [[annotation-experimental_annotation]]
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* [[P21-PWY]], pentose phosphate pathway (partial): [http://metacyc.org/META/NEW-IMAGE?object=P21-PWY P21-PWY]
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*** Assignment: ec-number
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* Reaction: [[UDPREDUCT-RXN]]
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* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
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** Source: [[annotation-experimental_annotation]]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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*** Assignment: ec-number
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* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
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== Pathways associated ==
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7210]]
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* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
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* [[PWY-7198]]
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** '''11''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-7220]]
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* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
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* [[PWY-7184]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7222]]
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== Reconstruction information  ==
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* [[PWY0-166]]
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* [[orthology]]:
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* [[PWY-7227]]
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** [[pantograph]]:
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* [[PWY-7226]]
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*** [[synechocystis]]
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* [[PWY-6545]]
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*** [[athaliana]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=8810}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10508 10508]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=3292}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01641 R01641]
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{{#set: centisome position=36.671494    }}
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* UNIPROT:
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{{#set: reaction associated=ADPREDUCT-RXN|CDPREDUCT-RXN|GDPREDUCT-RXN|RIBONUCLEOSIDE-DIP-REDUCTI-RXN|RIBONUCLEOSIDE-DIP-REDUCTII-RXN|RXN0-722|RXN0-747|RXN0-748|UDPREDUCT-RXN}}
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** [http://www.uniprot.org/uniprot/P29401 P29401]
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{{#set: pathway associated=PWY-7210|PWY-7198|PWY-7220|PWY-7184|PWY-7222|PWY0-166|PWY-7227|PWY-7226|PWY-6545}}
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** [http://www.uniprot.org/uniprot/P33570 P33570]
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** [http://www.uniprot.org/uniprot/P21725 P21725]
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** [http://www.uniprot.org/uniprot/Q58094 Q58094]
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** [http://www.uniprot.org/uniprot/Q9JTR1 Q9JTR1]
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** [http://www.uniprot.org/uniprot/Q9CF56 Q9CF56]
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** [http://www.uniprot.org/uniprot/P21726 P21726]
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** [http://www.uniprot.org/uniprot/P47312 P47312]
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** [http://www.uniprot.org/uniprot/Q9PM31 Q9PM31]
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** [http://www.uniprot.org/uniprot/P43757 P43757]
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** [http://www.uniprot.org/uniprot/Q58092 Q58092]
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** [http://www.uniprot.org/uniprot/P45694 P45694]
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** [http://www.uniprot.org/uniprot/Q52723 Q52723]
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** [http://www.uniprot.org/uniprot/Q9Z475 Q9Z475]
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** [http://www.uniprot.org/uniprot/P34736 P34736]
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** [http://www.uniprot.org/uniprot/P33315 P33315]
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** [http://www.uniprot.org/uniprot/Q42675 Q42675]
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** [http://www.uniprot.org/uniprot/Q42676 Q42676]
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** [http://www.uniprot.org/uniprot/Q42677 Q42677]
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** [http://www.uniprot.org/uniprot/P46708 P46708]
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** [http://www.uniprot.org/uniprot/P75611 P75611]
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** [http://www.uniprot.org/uniprot/P73282 P73282]
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** [http://www.uniprot.org/uniprot/Q49047 Q49047]
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** [http://www.uniprot.org/uniprot/O20250 O20250]
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** [http://www.uniprot.org/uniprot/O78327 O78327]
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** [http://www.uniprot.org/uniprot/Q9URM2 Q9URM2]
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** [http://www.uniprot.org/uniprot/Q9RFB7 Q9RFB7]
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** [http://www.uniprot.org/uniprot/P23254 P23254]
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** [http://www.uniprot.org/uniprot/P27302 P27302]
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** [http://www.uniprot.org/uniprot/P29277 P29277]
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** [http://www.uniprot.org/uniprot/P22976 P22976]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=transketolase}}
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{{#set: ec number=EC-2.2.1.1}}
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{{#set: gene associated=Tiso_gene_5008|Tiso_gene_11559}}
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{{#set: in pathway=P124-PWY|CALVIN-PWY|P21-PWY|PWY-5723|PWY-1861|P185-PWY|NONOXIPENT-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|athaliana}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:54, 21 March 2018

Gene Tiso_gene_9915

  • right end position:
    • 8810
  • transcription direction:
    • POSITIVE
  • left end position:
    • 3292
  • centisome position:
    • 36.671494
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_9915&oldid=44583"