Difference between revisions of "URIDINE-NUCLEOSIDASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSNACMURPENTATRANS-RXN PHOSNACMURPENTATRANS-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=URIDINE-NUCLEOSIDASE-RXN URIDINE-NUCLEOSIDASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSNACMURPENTATRANS-RXN PHOSNACMURPENTATRANS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=URIDINE-NUCLEOSIDASE-RXN URIDINE-NUCLEOSIDASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase
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** inosine-uridine_preferring_nucleoside_hydrolase
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** ORF
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.8.13 EC-2.7.8.13]
+
** [http://enzyme.expasy.org/EC/3.2.2.3 EC-3.2.2.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-9646]][c] '''+''' 1 [[C1]][c] '''=>''' 1 [[C5]][c] '''+''' 1 [[UMP]][c]
+
** 1 [[URIDINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[D-Ribofuranose]][c] '''+''' 1 [[URACIL]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 di-trans,octa-cis-undecaprenyl phosphate[c] '''+''' 1 UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine[c] '''=>''' 1 undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine[c] '''+''' 1 UMP[c]
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** 1 uridine[c] '''+''' 1 H2O[c] '''=>''' 1 D-ribofuranose[c] '''+''' 1 uracil[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_1604]]
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* Gene: [[Tiso_gene_9396]]
−
** IN-SILICO_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PEPTIDOGLYCANSYN-PWY]], peptidoglycan biosynthesis I (meso-diaminopimelate containing): [http://metacyc.org/META/NEW-IMAGE?object=PEPTIDOGLYCANSYN-PWY PEPTIDOGLYCANSYN-PWY]
+
* [[PWY-6556]], pyrimidine ribonucleosides salvage II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6556 PWY-6556]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-creinhardtii]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28386 28386]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15577 15577]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05630 R05630]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01080 R01080]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q55986 Q55986]
+
−
** [http://www.uniprot.org/uniprot/P45062 P45062]
+
−
** [http://www.uniprot.org/uniprot/Q03521 Q03521]
+
−
** [http://www.uniprot.org/uniprot/O25235 O25235]
+
−
** [http://www.uniprot.org/uniprot/Q9JSZ3 Q9JSZ3]
+
−
** [http://www.uniprot.org/uniprot/Q9PI72 Q9PI72]
+
−
** [http://www.uniprot.org/uniprot/P37585 P37585]
+
−
** [http://www.uniprot.org/uniprot/P0A6W3 P0A6W3]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase}}
+
{{#set: common name=inosine-uridine_preferring_nucleoside_hydrolase}}
−
{{#set: common name=ORF}}
+
{{#set: ec number=EC-3.2.2.3}}
−
{{#set: ec number=EC-2.7.8.13}}
+
{{#set: gene associated=Tiso_gene_9396}}
−
{{#set: gene associated=Tiso_gene_1604}}
+
{{#set: in pathway=PWY-6556}}
−
{{#set: in pathway=PEPTIDOGLYCANSYN-PWY}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-creinhardtii}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 19:55, 21 March 2018

Reaction URIDINE-NUCLEOSIDASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • inosine-uridine_preferring_nucleoside_hydrolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 uridine[c] + 1 H2O[c] => 1 D-ribofuranose[c] + 1 uracil[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6556, pyrimidine ribonucleosides salvage II: PWY-6556
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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