Difference between revisions of "Tiso gene 2841"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSNACMURPENTATRANS-RXN PHOSNACMURPENTATRANS-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
(Created page with "Category:Gene == Gene Tiso_gene_2841 == * right end position: ** 5091 * transcription direction: ** POSITIVE * left end position: ** 1622 * centisome position: ** 8.847433...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSNACMURPENTATRANS-RXN PHOSNACMURPENTATRANS-RXN] ==
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== Gene Tiso_gene_2841 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5091
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* common name:
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* transcription direction:
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** UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase
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** POSITIVE
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** ORF
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* left end position:
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* ec number:
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** 1622
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** [http://enzyme.expasy.org/EC/2.7.8.13 EC-2.7.8.13]
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* centisome position:
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** 8.847433   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3PGAREARR-RXN]]
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** 1 [[C1]][c] '''+''' 1 [[CPD-9646]][c] '''=>''' 1 [[C5]][c] '''+''' 1 [[UMP]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine[c] '''+''' 1 di-trans,octa-cis-undecaprenyl phosphate[c] '''=>''' 1 undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine[c] '''+''' 1 UMP[c]
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* Reaction: [[RXN-15509]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-15510]]
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* [[Tiso_gene_1604]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-15511]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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== Pathways  ==
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*** Assignment: ec-number
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* [[PEPTIDOGLYCANSYN-PWY]], peptidoglycan biosynthesis I (meso-diaminopimelate containing): [http://metacyc.org/META/NEW-IMAGE?object=PEPTIDOGLYCANSYN-PWY PEPTIDOGLYCANSYN-PWY]
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* Reaction: [[RXN-15512]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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** Source: [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** Assignment: ec-number
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* Category: [[orthology]]
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* Reaction: [[RXN-15513]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-1042]]
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* [[P341-PWY]]
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* [[PWY-2221]]
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* [[PWY-1622]]
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* [[GLUCONEO-PWY]]
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* [[GLYCOLYSIS]]
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* [[PWY-6901]]
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* [[ANAGLYCOLYSIS-PWY]]
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* [[PWY-7218]]
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* [[PWY-6405]]
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* [[P124-PWY]]
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* [[PWY-6886]]
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* [[PWY66-399]]
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* [[PWY-5723]]
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* [[PWY-6142]]
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* [[PWY-5484]]
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* [[PWY-7124]]
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* [[P122-PWY]]
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* [[PWY-7003]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=5091}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28386 28386]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=1622}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05630 R05630]
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{{#set: centisome position=8.847433    }}
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* UNIPROT:
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{{#set: reaction associated=3PGAREARR-RXN|RXN-15509|RXN-15510|RXN-15511|RXN-15512|RXN-15513}}
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** [http://www.uniprot.org/uniprot/Q55986 Q55986]
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{{#set: pathway associated=PWY-1042|P341-PWY|PWY-2221|PWY-1622|GLUCONEO-PWY|GLYCOLYSIS|PWY-6901|ANAGLYCOLYSIS-PWY|PWY-7218|PWY-6405|P124-PWY|PWY-6886|PWY66-399|PWY-5723|PWY-6142|PWY-5484|PWY-7124|P122-PWY|PWY-7003}}
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** [http://www.uniprot.org/uniprot/P45062 P45062]
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** [http://www.uniprot.org/uniprot/Q03521 Q03521]
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** [http://www.uniprot.org/uniprot/O25235 O25235]
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** [http://www.uniprot.org/uniprot/Q9JSZ3 Q9JSZ3]
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** [http://www.uniprot.org/uniprot/Q9PI72 Q9PI72]
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** [http://www.uniprot.org/uniprot/P37585 P37585]
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** [http://www.uniprot.org/uniprot/P0A6W3 P0A6W3]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-2.7.8.13}}
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{{#set: gene associated=Tiso_gene_1604}}
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{{#set: in pathway=PEPTIDOGLYCANSYN-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:55, 21 March 2018

Gene Tiso_gene_2841

  • right end position:
    • 5091
  • transcription direction:
    • POSITIVE
  • left end position:
    • 1622
  • centisome position:
    • 8.847433
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_2841&oldid=44630"