Difference between revisions of "PHOSNACMURPENTATRANS-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_3260 == * right end position: ** 11548 * transcription direction: ** NEGATIVE * left end position: ** 10034 * centisome position: ** 58.520...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSNACMURPENTATRANS-RXN PHOSNACMURPENTATRANS-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_3260 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSNACMURPENTATRANS-RXN PHOSNACMURPENTATRANS-RXN] ==
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* right end position:
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* direction:
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** 11548
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase
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* left end position:
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** ORF
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** 10034
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.7.8.13 EC-2.7.8.13]
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** 58.520935   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[1.2.1.25-RXN]]
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* With identifiers:
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** Source: [[annotation-experimental_annotation]]
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** 1 [[CPD-9646]][c] '''+''' 1 [[C1]][c] '''=>''' 1 [[C5]][c] '''+''' 1 [[UMP]][c]
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*** Assignment: automated-name-match
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* With common name(s):
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* Reaction: [[1.2.4.4-RXN]]
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** 1 di-trans,octa-cis-undecaprenyl phosphate[c] '''+''' 1 UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine[c] '''=>''' 1 undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine[c] '''+''' 1 UMP[c]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_1604]]
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* Reaction: [[2.3.1.168-RXN]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[2KETO-3METHYLVALERATE-RXN]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[KETOISOCAPROATE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** Assignment: ec-number
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== Pathways  ==
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* Reaction: [[METHYLVALERATE-RXN]]
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* [[PEPTIDOGLYCANSYN-PWY]], peptidoglycan biosynthesis I (meso-diaminopimelate containing): [http://metacyc.org/META/NEW-IMAGE?object=PEPTIDOGLYCANSYN-PWY PEPTIDOGLYCANSYN-PWY]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7719]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-5046]]
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* [[VALDEG-PWY]]
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* [[ILEUDEG-PWY]]
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* [[PWY-5108]]
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== External links  ==
 
== External links  ==
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{{#set: right end position=11548}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28386 28386]
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{{#set: left end position=10034}}
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* LIGAND-RXN:
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{{#set: centisome position=58.520935    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R05630 R05630]
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{{#set: reaction associated=1.2.1.25-RXN|1.2.4.4-RXN|2.3.1.168-RXN|2KETO-3METHYLVALERATE-RXN|KETOISOCAPROATE-RXN|METHYLVALERATE-RXN|RXN-7719}}
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* UNIPROT:
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{{#set: pathway associated=PWY-5046|VALDEG-PWY|ILEUDEG-PWY|PWY-5108}}
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** [http://www.uniprot.org/uniprot/Q55986 Q55986]
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** [http://www.uniprot.org/uniprot/P45062 P45062]
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** [http://www.uniprot.org/uniprot/Q03521 Q03521]
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** [http://www.uniprot.org/uniprot/O25235 O25235]
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** [http://www.uniprot.org/uniprot/Q9JSZ3 Q9JSZ3]
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** [http://www.uniprot.org/uniprot/Q9PI72 Q9PI72]
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** [http://www.uniprot.org/uniprot/P37585 P37585]
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** [http://www.uniprot.org/uniprot/P0A6W3 P0A6W3]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-2.7.8.13}}
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{{#set: gene associated=Tiso_gene_1604}}
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{{#set: in pathway=PEPTIDOGLYCANSYN-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:55, 21 March 2018

Reaction PHOSNACMURPENTATRANS-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 di-trans,octa-cis-undecaprenyl phosphate[c] + 1 UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine[c] => 1 undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine[c] + 1 UMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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