Difference between revisions of "COBALAMINSYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10058 RXN-10058] == * direction: ** LEFT-TO-RIGHT * common name: ** 2,5-diamino-6-(5-phosphorib...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=COBALAMINSYN-RXN COBALAMINSYN-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.exp...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10058 RXN-10058] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=COBALAMINSYN-RXN COBALAMINSYN-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
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** REVERSIBLE
−
* common name:
+
−
** 2,5-diamino-6-(5-phosphoribitylamino)pyrimidin-4(3H)-one deaminase
+
−
** drap_deaminase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.5.4 EC-3.5.4]
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** [http://enzyme.expasy.org/EC/2.7.8.26 EC-2.7.8.26]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[CPD-10809]][c] '''=>''' 1 [[CPD-1086]][c] '''+''' 1 [[AMMONIUM]][c]
+
** 1 [[ADENOSYLCOBINAMIDE-GDP]][c] '''+''' 1 [[ALPHA-RIBAZOLE]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[ADENOSYLCOBALAMIN]][c] '''+''' 1 [[GMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 H2O[c] '''+''' 1 2,5-diamino-6-(5-phospho-D-ribitylamino)pyrimidin-4(3H)-one[c] '''=>''' 1 5-amino-6-(5-phospho-D-ribitylamino)uracil[c] '''+''' 1 ammonium[c]
+
** 1 adenosylcobinamide-GDP[c] '''+''' 1 &alpha;-ribazole[c] '''<=>''' 1 H+[c] '''+''' 1 adenosylcobalamin[c] '''+''' 1 GMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_17798]]
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* Gene: [[Tiso_gene_8411]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-synechocystis]]
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***AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_8410]]
 +
** Source: [[orthology-synechocystis]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
+
* [[PWY-5508]], adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5508 PWY-5508]
−
** '''4''' reactions found over '''10''' reactions in the full pathway
+
** '''3''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[annotation]]
+
* Category: [[orthology]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[orthology-synechocystis]]
−
*** Tool: [[pathwaytools]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16049 16049]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R09377 R09377]
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** [http://www.genome.jp/dbget-bin/www_bget?R05223 R05223]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=2,5-diamino-6-(5-phosphoribitylamino)pyrimidin-4(3H)-one deaminase}}
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{{#set: ec number=EC-2.7.8.26}}
−
{{#set: common name=drap_deaminase}}
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{{#set: gene associated=Tiso_gene_8411|Tiso_gene_8410}}
−
{{#set: ec number=EC-3.5.4}}
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{{#set: in pathway=PWY-5508}}
−
{{#set: gene associated=Tiso_gene_17798}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: in pathway=PWY-6167|PWY-6168}}
+
{{#set: reconstruction source=orthology-synechocystis}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 19:55, 21 March 2018

Reaction COBALAMINSYN-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5508, adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II: PWY-5508
    • 3 reactions found over 9 reactions in the full pathway

Reconstruction information

External links




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