Difference between revisions of "RXN-13602"

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(Created page with "Category:Gene == Gene Tiso_gene_13847 == * left end position: ** 11841 * transcription direction: ** POSITIVE * right end position: ** 13053 * centisome position: ** 88.29...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13602 RXN-13602] == * direction: ** LEFT-TO-RIGHT * common name: ** linustatin β-diglucosi...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_13847 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13602 RXN-13602] ==
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* left end position:
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* direction:
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** 11841
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** linustatin β-diglucosidase
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* right end position:
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** beta-glucosidase-like_chloroplastic
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** 13053
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** ORF
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* centisome position:
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** low_quality_protein:_beta-glucosidase-like_chloroplastic-like
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** 88.299774   
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** beta_glucosidase
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* ec number:
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** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN]]
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* With identifiers:
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** [[pantograph]]-[[esiliculosus]]
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** 1 [[WATER]][c] '''+''' 1 [[CPD-14594]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[LINAMARIN]][c]
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* [[H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN]]
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* With common name(s):
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** [[pantograph]]-[[esiliculosus]]
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** 1 H2O[c] '''+''' 1 linustatin[c] '''=>''' 1 D-glucopyranose[c] '''+''' 1 linamarin[c]
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* [[RXN-15684]]
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** in-silico_annotation
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== Genes associated with this reaction  ==
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***ec-number
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Genes have been associated with this reaction based on different elements listed below.
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** [[pantograph]]-[[esiliculosus]]
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* Gene: [[Tiso_gene_2843]]
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* [[THIOL-OXIDASE-RXN]]
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** Source: [[orthology-esiliculosus]]
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** in-silico_annotation
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* Gene: [[Tiso_gene_3467]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: EC-NUMBER
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== Pathways associated ==
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** Source: [[annotation-experimental_annotation]]
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* [[PWY-7539]]
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*** Assignment: EC-NUMBER
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* [[PWY-7533]]
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* Gene: [[Tiso_gene_6188]]
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* [[PWY-6797]]
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-6147]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_2344]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_5836]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_6007]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_6497]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_10001]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_6187]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_13306]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_15067]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_13305]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_15066]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_8669]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways ==
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* [[PWY-7091]], linustatin bioactivation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7091 PWY-7091]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=11841}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=linustatin β-diglucosidase}}
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{{#set: right end position=13053}}
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{{#set: common name=beta-glucosidase-like_chloroplastic}}
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{{#set: centisome position=88.299774    }}
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{{#set: common name=ORF}}
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{{#set: reaction associated=DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN|H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN|RXN-15684|THIOL-OXIDASE-RXN}}
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{{#set: common name=low_quality_protein:_beta-glucosidase-like_chloroplastic-like}}
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{{#set: pathway associated=PWY-7539|PWY-7533|PWY-6797|PWY-6147}}
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{{#set: common name=beta_glucosidase}}
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{{#set: ec number=EC-3.2.1.21}}
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{{#set: gene associated=Tiso_gene_2843|Tiso_gene_3467|Tiso_gene_6188|Tiso_gene_2344|Tiso_gene_5836|Tiso_gene_6007|Tiso_gene_6497|Tiso_gene_10001|Tiso_gene_6187|Tiso_gene_13306|Tiso_gene_15067|Tiso_gene_13305|Tiso_gene_15066|Tiso_gene_8669}}
 +
{{#set: in pathway=PWY-7091}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:56, 21 March 2018

Reaction RXN-13602

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • linustatin β-diglucosidase
    • beta-glucosidase-like_chloroplastic
    • ORF
    • low_quality_protein:_beta-glucosidase-like_chloroplastic-like
    • beta_glucosidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7091, linustatin bioactivation: PWY-7091
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-13602&oldid=44708"