Difference between revisions of "Tiso gene 10173"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FPPSYN-RXN FPPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/E...")
(Created page with "Category:Gene == Gene Tiso_gene_10173 == * right end position: ** 6981 * transcription direction: ** NEGATIVE * left end position: ** 4535 * centisome position: ** 51.8819...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FPPSYN-RXN FPPSYN-RXN] ==
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== Gene Tiso_gene_10173 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 6981
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/2.5.1.10 EC-2.5.1.10]
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** NEGATIVE
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* left end position:
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** 4535
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* centisome position:
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** 51.881935   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[2-DEHYDROPANTOATE-REDUCT-RXN]]
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** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[GERANYL-PP]][c] '''=>''' 1 [[FARNESYL-PP]][c] '''+''' 1 [[PPI]][c]
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** Source: [[orthology-synechocystis]]
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* With common name(s):
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* Reaction: [[ACETOLACTREDUCTOISOM-RXN]]
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** 1 isopentenyl diphosphate[c] '''+''' 1 geranyl diphosphate[c] '''=>''' 1 (2E,6E)-farnesyl diphosphate[c] '''+''' 1 diphosphate[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[ACETOOHBUTREDUCTOISOM-RXN]]
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* [[Tiso_gene_16284]]
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** Source: [[annotation-experimental_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** Assignment: ec-number
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** [[pantograph]]-[[synechocystis]]
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[R05068]]
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== Pathways  ==
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** Source: [[orthology-synechocystis]]
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* [[PWY-7721]], methyl phomopsenoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7721 PWY-7721]
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* Reaction: [[RXN-14106]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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** Source: [[orthology-synechocystis]]
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* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
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** Source: [[orthology-creinhardtii]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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** Source: [[orthology-creinhardtii]]
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* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
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** Source: [[orthology-creinhardtii]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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** Source: [[orthology-creinhardtii]]
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* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
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== Pathways associated ==
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* [[PANTO-PWY]]
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* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
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* [[ILEUSYN-PWY]]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6654]]
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== Reconstruction information  ==
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* [[VALSYN-PWY]]
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* [[orthology]]:
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* [[PWY-7111]]
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** [[pantograph]]:
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* [[PWY-5103]]
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*** [[synechocystis]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=6981}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19361 19361]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=4535}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02003 R02003]
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{{#set: centisome position=51.881935    }}
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* UNIPROT:
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{{#set: reaction associated=2-DEHYDROPANTOATE-REDUCT-RXN|ACETOLACTREDUCTOISOM-RXN|ACETOOHBUTREDUCTOISOM-RXN|R05068|RXN-14106}}
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** [http://www.uniprot.org/uniprot/P08524 P08524]
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{{#set: pathway associated=PANTO-PWY|ILEUSYN-PWY|PWY-6654|VALSYN-PWY|PWY-7111|PWY-5103}}
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** [http://www.uniprot.org/uniprot/P05369 P05369]
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** [http://www.uniprot.org/uniprot/P14324 P14324]
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** [http://www.uniprot.org/uniprot/Q9CH81 Q9CH81]
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** [http://www.uniprot.org/uniprot/Q9PM32 Q9PM32]
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** [http://www.uniprot.org/uniprot/P45204 P45204]
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** [http://www.uniprot.org/uniprot/Q9JSM0 Q9JSM0]
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** [http://www.uniprot.org/uniprot/P49350 P49350]
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** [http://www.uniprot.org/uniprot/P22939 P22939]
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** [http://www.uniprot.org/uniprot/Q08291 Q08291]
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** [http://www.uniprot.org/uniprot/P49349 P49349]
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** [http://www.uniprot.org/uniprot/Q09152 Q09152]
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** [http://www.uniprot.org/uniprot/P49351 P49351]
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** [http://www.uniprot.org/uniprot/P49352 P49352]
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** [http://www.uniprot.org/uniprot/Q43315 Q43315]
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** [http://www.uniprot.org/uniprot/O24241 O24241]
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** [http://www.uniprot.org/uniprot/O24242 O24242]
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** [http://www.uniprot.org/uniprot/Q92334 Q92334]
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** [http://www.uniprot.org/uniprot/Q92218 Q92218]
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** [http://www.uniprot.org/uniprot/Q92235 Q92235]
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** [http://www.uniprot.org/uniprot/Q92250 Q92250]
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** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
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** [http://www.uniprot.org/uniprot/P49353 P49353]
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** [http://www.uniprot.org/uniprot/O04882 O04882]
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** [http://www.uniprot.org/uniprot/O65004 O65004]
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** [http://www.uniprot.org/uniprot/O14230 O14230]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-2.5.1.10}}
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{{#set: gene associated=Tiso_gene_16284}}
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{{#set: in pathway=PWY-7721|PWY-6859|PWY-5123|PWY-7736|PWY-7102}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|athaliana|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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Latest revision as of 19:56, 21 March 2018

Gene Tiso_gene_10173

  • right end position:
    • 6981
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 4535
  • centisome position:
    • 51.881935
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10173&oldid=44719"