Difference between revisions of "Tiso gene 5609"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13602 RXN-13602] == * direction: ** LEFT-TO-RIGHT * common name: ** linustatin β-diglucosi...")
(Created page with "Category:Gene == Gene Tiso_gene_5609 == * right end position: ** 8593 * transcription direction: ** NEGATIVE * left end position: ** 6074 * centisome position: ** 46.18660...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13602 RXN-13602] ==
+
== Gene Tiso_gene_5609 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 8593
−
* common name:
+
* transcription direction:
−
** linustatin β-diglucosidase
+
** NEGATIVE
−
** beta-glucosidase-like_chloroplastic
+
* left end position:
−
** ORF
+
** 6074
−
** low_quality_protein:_beta-glucosidase-like_chloroplastic-like
+
* centisome position:
−
** beta_glucosidase
+
** 46.186604   
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[IDS1]]
−
** 1 [[WATER]][c] '''+''' 1 [[CPD-14594]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[LINAMARIN]][c]
+
** Source: [[orthology-creinhardtii]]
−
* With common name(s):
+
* Reaction: [[IDS2]]
−
** 1 H2O[c] '''+''' 1 linustatin[c] '''=>''' 1 D-glucopyranose[c] '''+''' 1 linamarin[c]
+
** Source: [[orthology-creinhardtii]]
−
 
+
* Reaction: [[ISPH2-RXN]]
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* Gene: [[Tiso_gene_2843]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_3467]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: ec-number
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: ec-number
−
* Gene: [[Tiso_gene_6188]]
+
** Source: [[orthology-athaliana]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[orthology-synechocystis]]
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_2344]]
+
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
−
* Gene: [[Tiso_gene_5836]]
+
* Reaction: [[R07219]]
 +
** Source: [[orthology-synechocystis]]
 +
* Reaction: [[RXN0-884]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: ec-number
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: ec-number
−
* Gene: [[Tiso_gene_6007]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_6497]]
+
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
−
* Gene: [[Tiso_gene_10001]]
+
== Pathways associated ==
−
** Source: [[orthology-esiliculosus]]
+
* [[NONMEVIPP-PWY]]
−
* Gene: [[Tiso_gene_6187]]
+
* [[PWY-7560]]
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_13306]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_15067]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_13305]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_15066]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_8669]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
== Pathways ==
+
−
* [[PWY-7091]], linustatin bioactivation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7091 PWY-7091]
+
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: right end position=8593}}
−
{{#set: common name=linustatin β-diglucosidase}}
+
{{#set: transcription direction=NEGATIVE}}
−
{{#set: common name=beta-glucosidase-like_chloroplastic}}
+
{{#set: left end position=6074}}
−
{{#set: common name=ORF}}
+
{{#set: centisome position=46.186604    }}
−
{{#set: common name=low_quality_protein:_beta-glucosidase-like_chloroplastic-like}}
+
{{#set: reaction associated=IDS1|IDS2|ISPH2-RXN|R07219|RXN0-884}}
−
{{#set: common name=beta_glucosidase}}
+
{{#set: pathway associated=NONMEVIPP-PWY|PWY-7560}}
−
{{#set: ec number=EC-3.2.1.21}}
+
−
{{#set: gene associated=Tiso_gene_2843|Tiso_gene_3467|Tiso_gene_6188|Tiso_gene_2344|Tiso_gene_5836|Tiso_gene_6007|Tiso_gene_6497|Tiso_gene_10001|Tiso_gene_6187|Tiso_gene_13306|Tiso_gene_15067|Tiso_gene_13305|Tiso_gene_15066|Tiso_gene_8669}}
+
−
{{#set: in pathway=PWY-7091}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:56, 21 March 2018

Gene Tiso_gene_5609

  • right end position:
    • 8593
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 6074
  • centisome position:
    • 46.186604
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5609&oldid=44727"