Difference between revisions of "RXN0-2382"

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(Created page with "Category:Gene == Gene Tiso_gene_8773 == * right end position: ** 6235 * transcription direction: ** POSITIVE * left end position: ** 4156 * centisome position: ** 41.97132...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2382 RXN0-2382] == * direction: ** LEFT-TO-RIGHT * common name: ** tryptophan_synthase_(alpha_...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_8773 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2382 RXN0-2382] ==
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* right end position:
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* direction:
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** 6235
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** tryptophan_synthase_(alpha_beta_chains)
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* left end position:
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* ec number:
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** 4156
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** [http://enzyme.expasy.org/EC/4.2.1.122 EC-4.2.1.122]
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* centisome position:
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** 41.97132   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[CYTOCHROME-B5-REDUCTASE-RXN]]
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* With identifiers:
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** 1 [[INDOLE]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
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* With common name(s):
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** 1 indole[c] '''+''' 1 L-serine[c] '''=>''' 1 L-tryptophan[c] '''+''' 1 H2O[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_17207]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_4604]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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*** Assignment: EC-NUMBER
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* Reaction: [[RXN-11195]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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*** Tool: [[pathwaytools]]
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== Pathways associated ==
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: right end position=6235}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26434 26434]
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{{#set: left end position=4156}}
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* LIGAND-RXN:
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{{#set: centisome position=41.97132    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00674 R00674]
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{{#set: reaction associated=CYTOCHROME-B5-REDUCTASE-RXN|RXN-11195}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=tryptophan_synthase_(alpha_beta_chains)}}
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{{#set: ec number=EC-4.2.1.122}}
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{{#set: gene associated=Tiso_gene_17207|Tiso_gene_4604}}
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{{#set: in pathway=TRPSYN-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:56, 21 March 2018

Reaction RXN0-2382

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • tryptophan_synthase_(alpha_beta_chains)
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 indole[c] + 1 L-serine[c] => 1 L-tryptophan[c] + 1 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • TRPSYN-PWY, L-tryptophan biosynthesis: TRPSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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