Difference between revisions of "LYSOPHOSPHOLIPASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THRESYN-RXN THRESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** threonine_syntha...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSOPHOSPHOLIPASE-RXN LYSOPHOSPHOLIPASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** lys...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THRESYN-RXN THRESYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSOPHOSPHOLIPASE-RXN LYSOPHOSPHOLIPASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
 +
** lysophospholipase
 
** ORF
 
** ORF
−
** threonine_synthase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.2.3.1 EC-4.2.3.1]
+
** [http://enzyme.expasy.org/EC/3.1.1.5 EC-3.1.1.5]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[O-PHOSPHO-L-HOMOSERINE]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[THR]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[2-Lysophosphatidylcholines]][c] '''=>''' 1 [[L-1-GLYCERO-PHOSPHORYLCHOLINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Carboxylates]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 O-phospho-L-homoserine[c] '''=>''' 1 phosphate[c] '''+''' 1 L-threonine[c]
+
** 1 H2O[c] '''+''' 1 a 1-acyl-sn-glycero-3-phosphocholine[c] '''=>''' 1 sn-glycero-3-phosphocholine[c] '''+''' 1 H+[c] '''+''' 1 a carboxylate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_419]]
+
* Gene: [[Tiso_gene_334]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_12478]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_20565]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
−
* Gene: [[Tiso_gene_12871]]
+
* Gene: [[Tiso_gene_12479]]
−
** Source: [[orthology-athaliana]]
+
−
** Source: [[orthology-synechocystis]]
+
−
** Source: [[orthology-creinhardtii]]
+
−
* Gene: [[Tiso_gene_2614]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Tiso_gene_418]]
+
* Gene: [[Tiso_gene_12375]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8353]]
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_19778]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_2505]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_15692]]
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[HOMOSER-THRESYN-PWY]], L-threonine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSER-THRESYN-PWY HOMOSER-THRESYN-PWY]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10840 10840]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15177 15177]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01466 R01466]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02746 R02746]
 +
** [http://www.genome.jp/dbget-bin/www_bget?R07291 R07291]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P04990 P04990]
+
** [http://www.uniprot.org/uniprot/O07427 O07427]
−
** [http://www.uniprot.org/uniprot/Q9Y9K2 Q9Y9K2]
+
** [http://www.uniprot.org/uniprot/Q7M3V3 Q7M3V3]
−
** [http://www.uniprot.org/uniprot/O28953 O28953]
+
** [http://www.uniprot.org/uniprot/P07000 P07000]
−
** [http://www.uniprot.org/uniprot/P66902 P66902]
+
** [http://www.uniprot.org/uniprot/P0ADA1 P0ADA1]
−
** [http://www.uniprot.org/uniprot/O59293 O59293]
+
** [http://www.uniprot.org/uniprot/P39457 P39457]
−
** [http://www.uniprot.org/uniprot/O66864 O66864]
+
** [http://www.uniprot.org/uniprot/Q03674 Q03674]
−
** [http://www.uniprot.org/uniprot/Q9PPA8 Q9PPA8]
+
** [http://www.uniprot.org/uniprot/P53541 P53541]
−
** [http://www.uniprot.org/uniprot/O58587 O58587]
+
** [http://www.uniprot.org/uniprot/P78854 P78854]
−
** [http://www.uniprot.org/uniprot/Q9V0P1 Q9V0P1]
+
** [http://www.uniprot.org/uniprot/O42970 O42970]
−
** [http://www.uniprot.org/uniprot/Q9V190 Q9V190]
+
** [http://www.uniprot.org/uniprot/Q9P327 Q9P327]
−
** [http://www.uniprot.org/uniprot/O26354 O26354]
+
−
** [http://www.uniprot.org/uniprot/O29700 O29700]
+
−
** [http://www.uniprot.org/uniprot/Q9WZ16 Q9WZ16]
+
−
** [http://www.uniprot.org/uniprot/Q9UZV8 Q9UZV8]
+
−
** [http://www.uniprot.org/uniprot/Q9JU91 Q9JU91]
+
−
** [http://www.uniprot.org/uniprot/Q9CDV8 Q9CDV8]
+
−
** [http://www.uniprot.org/uniprot/P44503 P44503]
+
−
** [http://www.uniprot.org/uniprot/Q58860 Q58860]
+
−
** [http://www.uniprot.org/uniprot/O66740 O66740]
+
−
** [http://www.uniprot.org/uniprot/O50114 O50114]
+
−
** [http://www.uniprot.org/uniprot/Q9YBW2 Q9YBW2]
+
−
** [http://www.uniprot.org/uniprot/P23669 P23669]
+
−
** [http://www.uniprot.org/uniprot/P27735 P27735]
+
−
** [http://www.uniprot.org/uniprot/Q00063 Q00063]
+
−
** [http://www.uniprot.org/uniprot/P74193 P74193]
+
−
** [http://www.uniprot.org/uniprot/P73711 P73711]
+
−
** [http://www.uniprot.org/uniprot/P16120 P16120]
+
−
** [http://www.uniprot.org/uniprot/P00934 P00934]
+
−
** [http://www.uniprot.org/uniprot/P29363 P29363]
+
−
** [http://www.uniprot.org/uniprot/Q9S7B5 Q9S7B5]
+
−
** [http://www.uniprot.org/uniprot/P45837 P45837]
+
−
** [http://www.uniprot.org/uniprot/Q42598 Q42598]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=lysophospholipase}}
 
{{#set: common name=ORF}}
 
{{#set: common name=ORF}}
−
{{#set: common name=threonine_synthase}}
+
{{#set: ec number=EC-3.1.1.5}}
−
{{#set: ec number=EC-4.2.3.1}}
+
{{#set: gene associated=Tiso_gene_334|Tiso_gene_12478|Tiso_gene_20565|Tiso_gene_12479|Tiso_gene_12375|Tiso_gene_8353|Tiso_gene_19778|Tiso_gene_2505|Tiso_gene_15692}}
−
{{#set: gene associated=Tiso_gene_419|Tiso_gene_12871|Tiso_gene_2614|Tiso_gene_418}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=HOMOSER-THRESYN-PWY}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:57, 21 March 2018

Reaction LYSOPHOSPHOLIPASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • lysophospholipase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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