Difference between revisions of "Tiso gene 19778"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-II-RXN GTP-CYCLOHYDRO-II-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** rib...")
(Created page with "Category:Gene == Gene Tiso_gene_19778 == * right end position: ** 1958 * transcription direction: ** POSITIVE * left end position: ** 116 * centisome position: ** 5.677924...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-II-RXN GTP-CYCLOHYDRO-II-RXN] ==
+
== Gene Tiso_gene_19778 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 1958
−
* common name:
+
* transcription direction:
−
** riboflavin_biosynthesis_protein
+
** POSITIVE
−
** ORF
+
* left end position:
−
* ec number:
+
** 116
−
** [http://enzyme.expasy.org/EC/3.5.4.25 EC-3.5.4.25]
+
* centisome position:
 +
** 5.6779246   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[3.1.1.64-RXN]]
−
** 3 [[WATER]][c] '''+''' 1 [[GTP]][c] '''=>''' 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''+''' 1 [[FORMATE]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[PPI]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 3 H2O[c] '''+''' 1 GTP[c] '''=>''' 1 2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one[c] '''+''' 1 formate[c] '''+''' 2 H+[c] '''+''' 1 diphosphate[c]
+
* Reaction: [[CARBOXYLESTERASE-RXN]]
−
 
+
** Source: [[annotation-in-silico_annotation]]
−
== Genes associated with this reaction  ==
+
*** Assignment: ec-number
−
Genes have been associated with this reaction based on different elements listed below.
+
* Reaction: [[LYSOPHOSPHOLIPASE-RXN]]
−
* [[Tiso_gene_14275]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: automated-name-match
−
***EC-NUMBER
+
* Reaction: [[RETINYL-PALMITATE-ESTERASE-RXN]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[synechocystis]]
+
*** Assignment: ec-number
−
* [[Tiso_gene_19932]]
+
* Reaction: [[RXN-10711]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: ec-number
−
* [[Tiso_gene_8035]]
+
* Reaction: [[RXN-10767]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: ec-number
−
== Pathways  ==
+
* Reaction: [[RXN-12252]]
−
* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7539 PWY-7539]
+
** Source: [[annotation-in-silico_annotation]]
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
*** Assignment: ec-number
−
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
+
* Reaction: [[RXN-12575]]
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
** Source: [[annotation-in-silico_annotation]]
−
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
+
*** Assignment: ec-number
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
* Reaction: [[RXN-15035]]
−
== Reconstruction information  ==
+
** Source: [[annotation-in-silico_annotation]]
−
* Category: [[orthology]]
+
*** Assignment: automated-name-match
−
** Source: [[orthology-athaliana]]
+
* Reaction: [[RXNQT-4366]]
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-synechocystis]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[annotation]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 +
== Pathways associated ==
 +
* [[PWY-7409]]
 +
* [[PWY-6857]]
 +
* [[PWY-6303]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: right end position=1958}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00425 R00425]
+
{{#set: transcription direction=POSITIVE}}
−
* UNIPROT:
+
{{#set: left end position=116}}
−
** [http://www.uniprot.org/uniprot/P0A7I7 P0A7I7]
+
{{#set: centisome position=5.6779246    }}
−
** [http://www.uniprot.org/uniprot/Q9PNU4 Q9PNU4]
+
{{#set: reaction associated=3.1.1.64-RXN|CARBOXYLESTERASE-RXN|LYSOPHOSPHOLIPASE-RXN|RETINYL-PALMITATE-ESTERASE-RXN|RXN-10711|RXN-10767|RXN-12252|RXN-12575|RXN-15035|RXNQT-4366}}
−
** [http://www.uniprot.org/uniprot/O08315 O08315]
+
{{#set: pathway associated=PWY-7409|PWY-6857|PWY-6303}}
−
** [http://www.uniprot.org/uniprot/O66679 O66679]
+
−
** [http://www.uniprot.org/uniprot/Q9PHU4 Q9PHU4]
+
−
** [http://www.uniprot.org/uniprot/O25484 O25484]
+
−
** [http://www.uniprot.org/uniprot/P0A5V0 P0A5V0]
+
−
** [http://www.uniprot.org/uniprot/P0A7I8 P0A7I8]
+
−
** [http://www.uniprot.org/uniprot/P43525 P43525]
+
−
** [http://www.uniprot.org/uniprot/P17620 P17620]
+
−
** [http://www.uniprot.org/uniprot/P38066 P38066]
+
−
** [http://www.uniprot.org/uniprot/P50139 P50139]
+
−
** [http://www.uniprot.org/uniprot/P74104 P74104]
+
−
** [http://www.uniprot.org/uniprot/O24019 O24019]
+
−
** [http://www.uniprot.org/uniprot/P51695 P51695]
+
−
** [http://www.uniprot.org/uniprot/P50855 P50855]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=riboflavin_biosynthesis_protein}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: ec number=EC-3.5.4.25}}
+
−
{{#set: gene associated=Tiso_gene_14275|Tiso_gene_19932|Tiso_gene_8035}}
+
−
{{#set: in pathway=PWY-7539|PWY-6168|RIBOSYN2-PWY}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:58, 21 March 2018

Gene Tiso_gene_19778

  • right end position:
    • 1958
  • transcription direction:
    • POSITIVE
  • left end position:
    • 116
  • centisome position:
    • 5.6779246
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_19778&oldid=44993"