Difference between revisions of "Tiso gene 19778"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10659 RXN-10659] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxoacyl-(acyl-carrier-pro...")
(Created page with "Category:Gene == Gene Tiso_gene_19778 == * right end position: ** 1958 * transcription direction: ** POSITIVE * left end position: ** 116 * centisome position: ** 5.677924...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10659 RXN-10659] ==
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== Gene Tiso_gene_19778 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 1958
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* common name:
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* transcription direction:
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** 3-oxoacyl-(acyl-carrier-protein)
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
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** 116
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* centisome position:
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** 5.6779246   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.1.1.64-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[3-oxo-cis-D9-hexadecenoyl-ACPs]][c] '''=>''' 1 [[3-hydroxy-cis-D9-hexaecenoyl-ACPs]][c] '''+''' 1 [[NADP]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 a 3-oxo-cis-Δ9-hexadecenoyl-[acp][c] '''=>''' 1 a (3R)-3-hydroxy cis Δ9-hexadecenoyl-[acp][c] '''+''' 1 NADP+[c]
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* Reaction: [[CARBOXYLESTERASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[LYSOPHOSPHOLIPASE-RXN]]
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* Gene: [[Tiso_gene_13083]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RETINYL-PALMITATE-ESTERASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-10711]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-10767]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-12252]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-12575]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-15035]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
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** Source: [[annotation-experimental_annotation]]
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* Reaction: [[RXNQT-4366]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_9885]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-6282]], palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6282 PWY-6282]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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* [[PWY-7409]]
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* [[PWY-6857]]
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* [[PWY-6303]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=1958}}
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{{#set: common name=3-oxoacyl-(acyl-carrier-protein)}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: ec number=EC-1.1.1.100}}
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{{#set: left end position=116}}
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{{#set: gene associated=Tiso_gene_13083|Tiso_gene_9885}}
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{{#set: centisome position=5.6779246    }}
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{{#set: in pathway=PWY-6282}}
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{{#set: reaction associated=3.1.1.64-RXN|CARBOXYLESTERASE-RXN|LYSOPHOSPHOLIPASE-RXN|RETINYL-PALMITATE-ESTERASE-RXN|RXN-10711|RXN-10767|RXN-12252|RXN-12575|RXN-15035|RXNQT-4366}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: pathway associated=PWY-7409|PWY-6857|PWY-6303}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:58, 21 March 2018

Gene Tiso_gene_19778

  • right end position:
    • 1958
  • transcription direction:
    • POSITIVE
  • left end position:
    • 116
  • centisome position:
    • 5.6779246
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_19778&oldid=44993"