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| − | [[Category:Reaction]] | + | [[Category:Metabolite]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12705 RXN-12705] == | + | == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=5-Methylcytosine-DNA 5-Methylcytosine-DNA] == |
| − | * direction:
| + | |
| − | ** LEFT-TO-RIGHT
| + | |
| | * common name: | | * common name: |
| − | ** hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit | + | ** a 5-methylcytosine in DNA |
| − | ** 3-hydroxyacyl-_dehydrogenase
| + | |
| − | ** hydroxyacyl-coenzyme_a_mitochondrial
| + | |
| − | * ec number:
| + | |
| − | ** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
| + | |
| | * Synonym(s): | | * Synonym(s): |
| | + | ** DNA containing 5-methylcytosine |
| | + | ** a DNA 5-methylcytosine |
| | | | |
| − | == Reaction Formula == | + | == Reaction(s) known to consume the compound == |
| − | * With identifiers:
| + | == Reaction(s) known to produce the compound == |
| − | ** 1 [[NAD]][c] '''+''' 1 [[CPD-13694]][c] '''=>''' 1 [[CPD-13695]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c]
| + | * [[DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN]] |
| − | * With common name(s):
| + | == Reaction(s) of unknown directionality == |
| − | ** 1 NAD+[c] '''+''' 1 24-hydroxy-3-oxocholest-4-en-26-oyl-CoA[c] '''=>''' 1 3,24-dioxocholest-4-en-26-oyl-CoA[c] '''+''' 1 H+[c] '''+''' 1 NADH[c]
| + | |
| − | | + | |
| − | == Genes associated with this reaction ==
| + | |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | |
| − | * Gene: [[Tiso_gene_18839]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | * Gene: [[Tiso_gene_5857]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | * Gene: [[Tiso_gene_14026]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | * Gene: [[Tiso_gene_18838]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | * Gene: [[Tiso_gene_14027]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | * Gene: [[Tiso_gene_14262]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | == Pathways == | + | |
| − | * [[PWY-6946]], cholesterol degradation to androstenedione II (cholesterol dehydrogenase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6946 PWY-6946]
| + | |
| − | ** '''3''' reactions found over '''22''' reactions in the full pathway
| + | |
| − | * [[PWY-6945]], cholesterol degradation to androstenedione I (cholesterol oxidase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6945 PWY-6945]
| + | |
| − | ** '''2''' reactions found over '''17''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * Category: [[orthology]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | * Category: [[annotation]]
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Tool: [[pathwaytools]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Tool: [[pathwaytools]]
| + | |
| | == External links == | | == External links == |
| − | {{#set: direction=LEFT-TO-RIGHT}}
| + | {{#set: common name=a 5-methylcytosine in DNA}} |
| − | {{#set: common name=hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit}} | + | {{#set: common name=DNA containing 5-methylcytosine|a DNA 5-methylcytosine}} |
| − | {{#set: common name=3-hydroxyacyl-_dehydrogenase}} | + | {{#set: produced by=DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN}} |
| − | {{#set: common name=hydroxyacyl-coenzyme_a_mitochondrial}} | + | |
| − | {{#set: ec number=EC-1.1.1.35}}
| + | |
| − | {{#set: gene associated=Tiso_gene_18839|Tiso_gene_5857|Tiso_gene_14026|Tiso_gene_18838|Tiso_gene_14027|Tiso_gene_14262}}
| + | |
| − | {{#set: in pathway=PWY-6946|PWY-6945}}
| + | |
| − | {{#set: reconstruction category=orthology|annotation}}
| + | |
| − | {{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
| + | |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}}
| + | |
