Difference between revisions of "Tiso gene 8585"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NAPHTHOATE-SYN-RXN NAPHTHOATE-SYN-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enz...")
(Created page with "Category:Gene == Gene Tiso_gene_8585 == * right end position: ** 7539 * transcription direction: ** POSITIVE * left end position: ** 6090 * centisome position: ** 60.38072...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NAPHTHOATE-SYN-RXN NAPHTHOATE-SYN-RXN] ==
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== Gene Tiso_gene_8585 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 7539
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/4.1.3.36 EC-4.1.3.36]
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** POSITIVE
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* left end position:
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** 6090
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* centisome position:
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** 60.380726   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[6PGLUCONOLACT-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[CPD-6972]][c] '''=>''' 1 [[CPD-9925]][c] '''+''' 1 [[WATER]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 H+[c] '''+''' 1 4-(2'-carboxyphenyl)-4-oxobutyryl-CoA[c] '''=>''' 1 1,4-dihydroxy-2-naphthoyl-CoA[c] '''+''' 1 H2O[c]
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== Pathways associated ==
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* [[P122-PWY]]
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== Genes associated with this reaction  ==
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* [[RUMP-PWY]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[OXIDATIVEPENT-PWY]]
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* Gene: [[Tiso_gene_14257]]
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* [[GLYCOLYSIS-E-D]]
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** Source: [[orthology-athaliana]]
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* Gene: [[Tiso_gene_19690]]
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** Source: [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_16145]]
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** Source: [[orthology-synechocystis]]
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== Pathways ==
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* [[PWY-5837]], 1,4-dihydroxy-2-naphthoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5837 PWY-5837]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=7539}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26562 26562]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=6090}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07263 R07263]
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{{#set: centisome position=60.380726    }}
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* UNIPROT:
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{{#set: reaction associated=6PGLUCONOLACT-RXN}}
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** [http://www.uniprot.org/uniprot/Q9CHK2 Q9CHK2]
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{{#set: pathway associated=P122-PWY|RUMP-PWY|OXIDATIVEPENT-PWY|GLYCOLYSIS-E-D}}
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** [http://www.uniprot.org/uniprot/P44960 P44960]
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** [http://www.uniprot.org/uniprot/P0ABU0 P0ABU0]
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** [http://www.uniprot.org/uniprot/P23966 P23966]
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** [http://www.uniprot.org/uniprot/Q59464 Q59464]
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** [http://www.uniprot.org/uniprot/P73495 P73495]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-4.1.3.36}}
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{{#set: gene associated=Tiso_gene_14257|Tiso_gene_19690|Tiso_gene_16145}}
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{{#set: in pathway=PWY-5837}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana|orthology-synechocystis}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 21:00, 21 March 2018

Gene Tiso_gene_8585

  • right end position:
    • 7539
  • transcription direction:
    • POSITIVE
  • left end position:
    • 6090
  • centisome position:
    • 60.380726
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_8585&oldid=45179"