Difference between revisions of "UDPREDUCT-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_10894 == * left end position: ** 6125 * transcription direction: ** POSITIVE * right end position: ** 8130 * centisome position: ** 74.5315...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPREDUCT-RXN UDPREDUCT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ribonucleoside-diph...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_10894 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPREDUCT-RXN UDPREDUCT-RXN] ==
−
* left end position:
+
* direction:
−
** 6125
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** POSITIVE
+
** ribonucleoside-diphosphate_reductase
−
* right end position:
+
* ec number:
−
** 8130
+
** [http://enzyme.expasy.org/EC/1.17.4.1 EC-1.17.4.1]
−
* centisome position:
+
−
** 74.53152   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[GLYOXII-RXN]]
+
* With identifiers:
−
** in-silico_annotation
+
** 1 [[Red-Thioredoxin]][c] '''+''' 1 [[UDP]][c] '''=>''' 1 [[DUDP]][c] '''+''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[WATER]][c]
−
***ec-number
+
* With common name(s):
−
** experimental_annotation
+
** 1 a reduced thioredoxin[c] '''+''' 1 UDP[c] '''=>''' 1 dUDP[c] '''+''' 1 an oxidized thioredoxin[c] '''+''' 1 H2O[c]
−
***ec-number
+
 
−
* [[RXN-7919]]
+
== Genes associated with this reaction  ==
−
** in-silico_annotation
+
Genes have been associated with this reaction based on different elements listed below.
−
***ec-number
+
* Gene: [[Tiso_gene_9915]]
−
** experimental_annotation
+
** Source: [[annotation-experimental_annotation]]
−
***ec-number
+
*** Assignment: EC-NUMBER
−
== Pathways associated ==
+
* Gene: [[Tiso_gene_9916]]
−
* [[PWY-5386]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_10138]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_10617]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways ==
 +
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
 +
** '''12''' reactions found over '''17''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=6125}}
+
* RHEA:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28026 28026]
−
{{#set: right end position=8130}}
+
* LIGAND-RXN:
−
{{#set: centisome position=74.53152    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R02018 R02018]
−
{{#set: reaction associated=GLYOXII-RXN|RXN-7919}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: pathway associated=PWY-5386}}
+
{{#set: common name=ribonucleoside-diphosphate_reductase}}
 +
{{#set: ec number=EC-1.17.4.1}}
 +
{{#set: gene associated=Tiso_gene_9915|Tiso_gene_9916|Tiso_gene_10138|Tiso_gene_10617}}
 +
{{#set: in pathway=PWY-7184|PWY-6545|PWY0-166}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:00, 21 March 2018

Reaction UDPREDUCT-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ribonucleoside-diphosphate_reductase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a reduced thioredoxin[c] + 1 UDP[c] => 1 dUDP[c] + 1 an oxidized thioredoxin[c] + 1 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III: PWY-6545
    • 8 reactions found over 9 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
    • 12 reactions found over 17 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=UDPREDUCT-RXN&oldid=45194"