Difference between revisions of "CPD-315"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.8-RXN 1.1.1.8-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** glycerol-3-phosp...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-315 CPD-315] == * smiles: ** CC4(=C(C)C=C3(N2(C%12(OC(CO)C(OP(=O)(O[CH](C)CNC(=O)CCC1(C)(C(...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.8-RXN 1.1.1.8-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-315 CPD-315] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** CC4(=C(C)C=C3(N2(C%12(OC(CO)C(OP(=O)(O[CH](C)CNC(=O)CCC1(C)(C(CC(=O)N)[CH]%11(C8(C)(C(CC(=O)N)(C)C(CCC(=O)N)C7(C(C)=C%10(C(CC(=O)N)(C)C(CCC(=O)N)C9(C=C6(C(C)(C)C(CCC(=O)N)C5(C(C)=C1N([Co---]([N+](=C2)C3=C4)(C#N)([N+]=56)([N+]=78)[N+]=9%10)%11)))))))))[O-])C(O)%12))))
 
* common name:
 
* common name:
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** ORF
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** cyanocob(III)alamin
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** glycerol-3-phosphate_dehydrogenase
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* inchi key:
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* ec number:
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** InChIKey=RMRCNWBMXRMIRW-WZHZPDAFSA-L
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** [http://enzyme.expasy.org/EC/1.1.1.8 EC-1.1.1.8]
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* molecular weight:
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** 1355.377   
 
* Synonym(s):
 
* Synonym(s):
 +
** cyanocobalamin
 +
** rubramin
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** vitamin B12
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** alphamine
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** crystamine
 +
** cyanoject
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** cyomin
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** cytamen
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** hydrobexan
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** rubesol
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[TransportSeed_CPD-315]]
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** 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[GLYCEROL-3P]][c] '''+''' 1 [[NAD]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[TransportSeed_CPD-315]]
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** 1 glycerone phosphate[c] '''+''' 1 NADH[c] '''+''' 1 H+[c] '''=>''' 1 sn-glycerol 3-phosphate[c] '''+''' 1 NAD+[c]
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== Reaction(s) of unknown directionality ==
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* [[ExchangeSeed_CPD-315]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_2811]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_2810]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6069]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_15777]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13013]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_3718]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[PWY-6118]], glycerol-3-phosphate shuttle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6118 PWY-6118]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7411]], phosphatidate biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7411 PWY-7411]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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* CAS : 68-19-9
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** [http://www.genome.jp/dbget-bin/www_bget?R00842 R00842]
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* DRUGBANK : DB00115
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* UNIPROT:
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* PUBCHEM:
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** [http://www.uniprot.org/uniprot/P13707 P13707]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=70678590 70678590]
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** [http://www.uniprot.org/uniprot/P08507 P08507]
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* HMDB : HMDB00607
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** [http://www.uniprot.org/uniprot/O25614 O25614]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/Q9JWH0 Q9JWH0]
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** [http://www.genome.jp/dbget-bin/www_bget?C02823 C02823]
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** [http://www.uniprot.org/uniprot/P43798 P43798]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/O29390 O29390]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=17439 17439]
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** [http://www.uniprot.org/uniprot/P46919 P46919]
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{{#set: smiles=CC4(=C(C)C=C3(N2(C%12(OC(CO)C(OP(=O)(O[CH](C)CNC(=O)CCC1(C)(C(CC(=O)N)[CH]%11(C8(C)(C(CC(=O)N)(C)C(CCC(=O)N)C7(C(C)=C%10(C(CC(=O)N)(C)C(CCC(=O)N)C9(C=C6(C(C)(C)C(CCC(=O)N)C5(C(C)=C1N([Co---]([N+](=C2)C3=C4)(C#N)([N+]=56)([N+]=78)[N+]=9%10)%11)))))))))[O-])C(O)%12))))}}
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** [http://www.uniprot.org/uniprot/P07735 P07735]
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{{#set: common name=cyanocob(III)alamin}}
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** [http://www.uniprot.org/uniprot/P13706 P13706]
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{{#set: inchi key=InChIKey=RMRCNWBMXRMIRW-WZHZPDAFSA-L}}
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** [http://www.uniprot.org/uniprot/Q00055 Q00055]
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{{#set: molecular weight=1355.377    }}
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** [http://www.uniprot.org/uniprot/P34517 P34517]
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{{#set: common name=cyanocobalamin|rubramin|vitamin B12|alphamine|crystamine|cyanoject|cyomin|cytamen|hydrobexan|rubesol}}
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** [http://www.uniprot.org/uniprot/P0A6S7 P0A6S7]
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{{#set: consumed by=TransportSeed_CPD-315}}
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** [http://www.uniprot.org/uniprot/P21695 P21695]
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{{#set: produced by=TransportSeed_CPD-315}}
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** [http://www.uniprot.org/uniprot/P41911 P41911]
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{{#set: reversible reaction associated=ExchangeSeed_CPD-315}}
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** [http://www.uniprot.org/uniprot/P90593 P90593]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: common name=glycerol-3-phosphate_dehydrogenase}}
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{{#set: ec number=EC-1.1.1.8}}
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{{#set: gene associated=Tiso_gene_2811|Tiso_gene_2810|Tiso_gene_6069|Tiso_gene_15777|Tiso_gene_13013|Tiso_gene_3718}}
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{{#set: in pathway=PWY-6118|PWY-7411|PWY-7385}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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−
{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:02, 21 March 2018

Metabolite CPD-315

  • smiles:
    • CC4(=C(C)C=C3(N2(C%12(OC(CO)C(OP(=O)(O[CH](C)CNC(=O)CCC1(C)(C(CC(=O)N)[CH]%11(C8(C)(C(CC(=O)N)(C)C(CCC(=O)N)C7(C(C)=C%10(C(CC(=O)N)(C)C(CCC(=O)N)C9(C=C6(C(C)(C)C(CCC(=O)N)C5(C(C)=C1N([Co---]([N+](=C2)C3=C4)(C#N)([N+]=56)([N+]=78)[N+]=9%10)%11)))))))))[O-])C(O)%12))))
  • common name:
    • cyanocob(III)alamin
  • inchi key:
    • InChIKey=RMRCNWBMXRMIRW-WZHZPDAFSA-L
  • molecular weight:
    • 1355.377
  • Synonym(s):
    • cyanocobalamin
    • rubramin
    • vitamin B12
    • alphamine
    • crystamine
    • cyanoject
    • cyomin
    • cytamen
    • hydrobexan
    • rubesol

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 68-19-9
  • DRUGBANK : DB00115
  • PUBCHEM:
  • HMDB : HMDB00607
  • LIGAND-CPD:
  • CHEBI:
"CC4(=C(C)C=C3(N2(C%12(OC(CO)C(OP(=O)(O[CH](C)CNC(=O)CCC1(C)(C(CC(=O)N)[CH]%11(C8(C)(C(CC(=O)N)(C)C(CCC(=O)N)C7(C(C)=C%10(C(CC(=O)N)(C)C(CCC(=O)N)C9(C=C6(C(C)(C)C(CCC(=O)N)C5(C(C)=C1N([Co---]([N+](=C2)C3=C4)(C#N)([N+]=56)([N+]=78)[N+]=9%10)%11)))))))))[O-])C(O)%12))))" cannot be used as a page name in this wiki.




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