Difference between revisions of "RIBOFLAVINKIN-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7567 RXN-7567] == * direction: ** LEFT-TO-RIGHT * common name: ** indole-3-acetonitrile hydrata...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINKIN-RXN RIBOFLAVINKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** riboflavin_...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7567 RXN-7567] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINKIN-RXN RIBOFLAVINKIN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** indole-3-acetonitrile hydratase
+
** riboflavin_kinase
−
** probable_nitrile_hydratase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.2.1.84 EC-4.2.1.84]
+
** [http://enzyme.expasy.org/EC/2.7.1.26 EC-2.7.1.26]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[INDOLEYL-CPD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-237]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[RIBOFLAVIN]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[FMN]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 indole-3-acetonitrile[c] '''+''' 1 H2O[c] '''=>''' 1 indole-3-acetamide[c]
+
** 1 ATP[c] '''+''' 1 riboflavin[c] '''=>''' 1 ADP[c] '''+''' 1 FMN[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_4032]]
+
* Gene: [[Tiso_gene_7479]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
* Gene: [[Tiso_gene_16837]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1086]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-synechocystis]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-581]], indole-3-acetate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-581 PWY-581]
+
* [[PWY66-366]], flavin biosynthesis IV (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-366 PWY66-366]
−
** '''3''' reactions found over '''13''' reactions in the full pathway
+
−
* [[PWY-5025]], indole-3-acetate biosynthesis IV (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5025 PWY-5025]
+
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5523]], 5,6-dimethylbenzimidazole biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5523 PWY-5523]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14357 14357]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04020 R04020]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00549 R00549]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9JVY5 Q9JVY5]
 +
** [http://www.uniprot.org/uniprot/Q9PHS7 Q9PHS7]
 +
** [http://www.uniprot.org/uniprot/Q59263 Q59263]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=indole-3-acetonitrile hydratase}}
+
{{#set: common name=riboflavin_kinase}}
−
{{#set: common name=probable_nitrile_hydratase}}
+
{{#set: ec number=EC-2.7.1.26}}
−
{{#set: ec number=EC-4.2.1.84}}
+
{{#set: gene associated=Tiso_gene_7479|Tiso_gene_16837|Tiso_gene_1086}}
−
{{#set: gene associated=Tiso_gene_4032}}
+
{{#set: in pathway=PWY66-366|PWY-6168|RIBOSYN2-PWY|PWY-5523}}
−
{{#set: in pathway=PWY-581|PWY-5025}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 21:02, 21 March 2018

Reaction RIBOFLAVINKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • riboflavin_kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 riboflavin[c] => 1 ADP[c] + 1 FMN[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY66-366, flavin biosynthesis IV (mammalian): PWY66-366
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi): PWY-6168
    • 6 reactions found over 9 reactions in the full pathway
  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-5523, 5,6-dimethylbenzimidazole biosynthesis I (aerobic): PWY-5523
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RIBOFLAVINKIN-RXN&oldid=45393"