Difference between revisions of "UDPNACETYLMURAMATEDEHYDROG-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1104 RXN-1104] == * direction: ** LEFT-TO-RIGHT * common name: ** caffeate_o-methyltransferase...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPNACETYLMURAMATEDEHYDROG-RXN UDPNACETYLMURAMATEDEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * c...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1104 RXN-1104] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPNACETYLMURAMATEDEHYDROG-RXN UDPNACETYLMURAMATEDEHYDROG-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** caffeate_o-methyltransferase
+
** ORF
 +
** related_to_isoamyl_alcohol_oxidase
 +
** d-lactate_dehydrogenase
 +
** xylitol_oxidase
 +
** mitochondrial_l-galactono-_-lactone_dehydrogenase
 +
** oxidoreductase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.1.68 EC-2.1.1.68]
+
** [http://enzyme.expasy.org/EC/1.3.1.98 EC-1.3.1.98]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-676]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[FERULIC-ACID]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[UDP-ACETYL-CARBOXYVINYL-GLUCOSAMINE]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[UDP-N-ACETYLMURAMATE]][c] '''+''' 1 [[NADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 trans-caffeate[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 H+[c] '''+''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 ferulate[c]
+
** 1 H+[c] '''+''' 1 UDP-N-acetyl-α-D-glucosamine-enolpyruvate[c] '''+''' 1 NADPH[c] '''=>''' 1 UDP-N-acetyl-α-D-muramate[c] '''+''' 1 NADP+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_18257]]
+
* Gene: [[Tiso_gene_4659]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_18971]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_12058]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5194]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4661]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_210]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_6635]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5195]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2120]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6787]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7079]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14132]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2121]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2119]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8778]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14187]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7380]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12685]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_18014]]
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-2181]], free phenylpropanoid acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2181 PWY-2181]
+
* [[PWY-6386]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6386 PWY-6386]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
+
* [[PWY-6387]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6387 PWY-6387]
−
** '''9''' reactions found over '''19''' reactions in the full pathway
+
** '''1''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-7498]], phenylpropanoids methylation (ice plant): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7498 PWY-7498]
+
−
** '''2''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY-7186]], superpathway of scopolin and esculin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7186 PWY-7186]
+
−
** '''2''' reactions found over '''14''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20225 20225]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12248 12248]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03366 R03366]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03192 R03192]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q41086 Q41086]
+
** [http://www.uniprot.org/uniprot/Q9PM01 Q9PM01]
−
** [http://www.uniprot.org/uniprot/P28002 P28002]
+
** [http://www.uniprot.org/uniprot/Q9JV28 Q9JV28]
−
** [http://www.uniprot.org/uniprot/Q00763 Q00763]
+
** [http://www.uniprot.org/uniprot/P44605 P44605]
 +
** [http://www.uniprot.org/uniprot/P08373 P08373]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=caffeate_o-methyltransferase}}
+
{{#set: common name=ORF}}
−
{{#set: ec number=EC-2.1.1.68}}
+
{{#set: common name=related_to_isoamyl_alcohol_oxidase}}
−
{{#set: gene associated=Tiso_gene_18257|Tiso_gene_18971}}
+
{{#set: common name=d-lactate_dehydrogenase}}
−
{{#set: in pathway=PWY-2181|PWY-1121|PWY-7498|PWY-7186}}
+
{{#set: common name=xylitol_oxidase}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: common name=mitochondrial_l-galactono-_-lactone_dehydrogenase}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: common name=oxidoreductase}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: ec number=EC-1.3.1.98}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: gene associated=Tiso_gene_4659|Tiso_gene_12058|Tiso_gene_5194|Tiso_gene_4661|Tiso_gene_210|Tiso_gene_6635|Tiso_gene_5195|Tiso_gene_2120|Tiso_gene_6787|Tiso_gene_7079|Tiso_gene_14132|Tiso_gene_2121|Tiso_gene_2119|Tiso_gene_8778|Tiso_gene_14187|Tiso_gene_7380|Tiso_gene_12685|Tiso_gene_18014}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: in pathway=PWY-6386|PWY-6387}}
−
{{#set: reconstruction source=in-silico_annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:02, 21 March 2018

Reaction UDPNACETYLMURAMATEDEHYDROG-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • related_to_isoamyl_alcohol_oxidase
    • d-lactate_dehydrogenase
    • xylitol_oxidase
    • mitochondrial_l-galactono-_-lactone_dehydrogenase
    • oxidoreductase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6386, UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing): PWY-6386
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-6387, UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing): PWY-6387
    • 1 reactions found over 8 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=UDPNACETYLMURAMATEDEHYDROG-RXN&oldid=45406"