Difference between revisions of "UDPNACETYLMURAMATEDEHYDROG-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_2957 == * left end position: ** 16260 * transcription direction: ** POSITIVE * right end position: ** 17836 * centisome position: ** 90.706...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPNACETYLMURAMATEDEHYDROG-RXN UDPNACETYLMURAMATEDEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * c...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_2957 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPNACETYLMURAMATEDEHYDROG-RXN UDPNACETYLMURAMATEDEHYDROG-RXN] ==
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* left end position:
+
* direction:
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** 16260
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
−
** POSITIVE
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** ORF
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* right end position:
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** related_to_isoamyl_alcohol_oxidase
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** 17836
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** d-lactate_dehydrogenase
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* centisome position:
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** xylitol_oxidase
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** 90.70624   
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** mitochondrial_l-galactono-_-lactone_dehydrogenase
 +
** oxidoreductase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.3.1.98 EC-1.3.1.98]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
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== Reaction Formula ==
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* [[1.1.1.145-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[PROTON]][c] '''+''' 1 [[UDP-ACETYL-CARBOXYVINYL-GLUCOSAMINE]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[UDP-N-ACETYLMURAMATE]][c] '''+''' 1 [[NADP]][c]
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***ec-number
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* With common name(s):
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* [[RXN-12693]]
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** 1 H+[c] '''+''' 1 UDP-N-acetyl-α-D-glucosamine-enolpyruvate[c] '''+''' 1 NADPH[c] '''=>''' 1 UDP-N-acetyl-α-D-muramate[c] '''+''' 1 NADP+[c]
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** in-silico_annotation
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***ec-number
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== Genes associated with this reaction  ==
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* [[RXN-12747]]
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Genes have been associated with this reaction based on different elements listed below.
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** in-silico_annotation
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* Gene: [[Tiso_gene_4659]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-12789]]
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*** Assignment: EC-NUMBER
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** in-silico_annotation
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* Gene: [[Tiso_gene_12058]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN66-342]]
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*** Assignment: EC-NUMBER
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** in-silico_annotation
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* Gene: [[Tiso_gene_5194]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN66-350]]
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*** Assignment: EC-NUMBER
−
** in-silico_annotation
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* Gene: [[Tiso_gene_4661]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN66-353]]
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*** Assignment: EC-NUMBER
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** in-silico_annotation
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* Gene: [[Tiso_gene_210]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
−
== Pathways associated ==
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*** Assignment: EC-NUMBER
−
* [[PWY66-378]]
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** Source: [[orthology-esiliculosus]]
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* [[PWY-7299]]
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* Gene: [[Tiso_gene_6635]]
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* [[PWY-6948]]
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-6946]]
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*** Assignment: EC-NUMBER
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* [[PWY-6944]]
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* Gene: [[Tiso_gene_5195]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2120]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6787]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7079]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14132]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2121]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2119]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8778]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14187]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7380]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12685]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_18014]]
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways ==
 +
* [[PWY-6386]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6386 PWY-6386]
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6387]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6387 PWY-6387]
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=16260}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12248 12248]
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{{#set: right end position=17836}}
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* LIGAND-RXN:
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{{#set: centisome position=90.70624    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R03192 R03192]
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{{#set: reaction associated=1.1.1.145-RXN|RXN-12693|RXN-12747|RXN-12789|RXN66-342|RXN66-350|RXN66-353}}
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* UNIPROT:
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{{#set: pathway associated=PWY66-378|PWY-7299|PWY-6948|PWY-6946|PWY-6944}}
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** [http://www.uniprot.org/uniprot/Q9PM01 Q9PM01]
 +
** [http://www.uniprot.org/uniprot/Q9JV28 Q9JV28]
 +
** [http://www.uniprot.org/uniprot/P44605 P44605]
 +
** [http://www.uniprot.org/uniprot/P08373 P08373]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=related_to_isoamyl_alcohol_oxidase}}
 +
{{#set: common name=d-lactate_dehydrogenase}}
 +
{{#set: common name=xylitol_oxidase}}
 +
{{#set: common name=mitochondrial_l-galactono-_-lactone_dehydrogenase}}
 +
{{#set: common name=oxidoreductase}}
 +
{{#set: ec number=EC-1.3.1.98}}
 +
{{#set: gene associated=Tiso_gene_4659|Tiso_gene_12058|Tiso_gene_5194|Tiso_gene_4661|Tiso_gene_210|Tiso_gene_6635|Tiso_gene_5195|Tiso_gene_2120|Tiso_gene_6787|Tiso_gene_7079|Tiso_gene_14132|Tiso_gene_2121|Tiso_gene_2119|Tiso_gene_8778|Tiso_gene_14187|Tiso_gene_7380|Tiso_gene_12685|Tiso_gene_18014}}
 +
{{#set: in pathway=PWY-6386|PWY-6387}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:02, 21 March 2018

Reaction UDPNACETYLMURAMATEDEHYDROG-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • related_to_isoamyl_alcohol_oxidase
    • d-lactate_dehydrogenase
    • xylitol_oxidase
    • mitochondrial_l-galactono-_-lactone_dehydrogenase
    • oxidoreductase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6386, UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing): PWY-6386
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-6387, UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing): PWY-6387
    • 1 reactions found over 8 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=UDPNACETYLMURAMATEDEHYDROG-RXN&oldid=45406"