Difference between revisions of "RXN-1104"

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(Created page with "Category:Gene == Gene Tiso_gene_12201 == * right end position: ** 7218 * transcription direction: ** POSITIVE * left end position: ** 4780 * centisome position: ** 66.1683...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1104 RXN-1104] == * direction: ** LEFT-TO-RIGHT * common name: ** caffeate_o-methyltransferase...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_12201 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1104 RXN-1104] ==
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* right end position:
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* direction:
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** 7218
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** caffeate_o-methyltransferase
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* left end position:
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* ec number:
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** 4780
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** [http://enzyme.expasy.org/EC/2.1.1.68 EC-2.1.1.68]
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* centisome position:
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** 66.16833   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[HOLO-ACP-SYNTH-RXN]]
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* With identifiers:
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** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[CPD-676]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[FERULIC-ACID]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c]
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* With common name(s):
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** 1 S-adenosyl-L-methionine[c] '''+''' 1 trans-caffeate[c] '''=>''' 1 H+[c] '''+''' 1 ferulate[c] '''+''' 1 S-adenosyl-L-homocysteine[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_18971]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_18257]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
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== Pathways ==
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* [[PWY-6012-1]]
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* [[PWY-2181]], free phenylpropanoid acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2181 PWY-2181]
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* [[PWY-6012]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7498]], phenylpropanoids methylation (ice plant): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7498 PWY-7498]
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** '''2''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
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** '''9''' reactions found over '''19''' reactions in the full pathway
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* [[PWY-7186]], superpathway of scopolin and esculin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7186 PWY-7186]
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** '''2''' reactions found over '''14''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: right end position=7218}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20225 20225]
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{{#set: left end position=4780}}
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* LIGAND-RXN:
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{{#set: centisome position=66.16833    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R03366 R03366]
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{{#set: reaction associated=HOLO-ACP-SYNTH-RXN}}
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* UNIPROT:
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{{#set: pathway associated=PWY-6012-1|PWY-6012}}
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** [http://www.uniprot.org/uniprot/Q41086 Q41086]
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** [http://www.uniprot.org/uniprot/P28002 P28002]
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** [http://www.uniprot.org/uniprot/Q00763 Q00763]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=caffeate_o-methyltransferase}}
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{{#set: ec number=EC-2.1.1.68}}
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{{#set: gene associated=Tiso_gene_18971|Tiso_gene_18257}}
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{{#set: in pathway=PWY-2181|PWY-7498|PWY-1121|PWY-7186}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:02, 21 March 2018

Reaction RXN-1104

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • caffeate_o-methyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-2181, free phenylpropanoid acid biosynthesis: PWY-2181
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7498, phenylpropanoids methylation (ice plant): PWY-7498
    • 2 reactions found over 10 reactions in the full pathway
  • PWY-1121, suberin monomers biosynthesis: PWY-1121
    • 9 reactions found over 19 reactions in the full pathway
  • PWY-7186, superpathway of scopolin and esculin biosynthesis: PWY-7186
    • 2 reactions found over 14 reactions in the full pathway

Reconstruction information

External links





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