Difference between revisions of "RXN-13697"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1401 RXN0-1401] == * direction: ** LEFT-TO-RIGHT * common name: ** thymidine_phosphorylase * e...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13697 RXN-13697] == * direction: ** REVERSIBLE * common name: ** aspartate_aminotransferase **...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1401 RXN0-1401] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13697 RXN-13697] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** thymidine_phosphorylase
+
** aspartate_aminotransferase
 +
** aminotransferase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.4.23 EC-2.7.4.23]
+
** [http://enzyme.expasy.org/EC/2.6.1.1 EC-2.6.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[RIBOSE-15-BISPHOSPHATE]][c] '''=>''' 1 [[PRPP]][c] '''+''' 1 [[ADP]][c]
+
** 1 [[L-ASPARTATE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[OXALACETIC_ACID]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 &alpha;-D-ribose 1,5-bisphosphate[c] '''=>''' 1 5-phospho-&alpha;-D-ribose 1-diphosphate[c] '''+''' 1 ADP[c]
+
** 1 L-aspartate[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 oxaloacetate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_1011]]
+
* Gene: [[Tiso_gene_13538]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_12889]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_6815]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17718]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17809]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_15680]]
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7805]], aminomethylphosphonate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7805 PWY-7805]
+
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
** '''7''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY0-661]], PRPP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-661 PWY0-661]
+
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7807]], glyphosate degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7807 PWY-7807]
+
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20109 20109]
+
{{#set: common name=aspartate_aminotransferase}}
−
* LIGAND-RXN:
+
{{#set: common name=aminotransferase}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R06836 R06836]
+
{{#set: ec number=EC-2.6.1.1}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: gene associated=Tiso_gene_13538|Tiso_gene_12889|Tiso_gene_6815|Tiso_gene_17718|Tiso_gene_17809|Tiso_gene_15680}}
−
{{#set: common name=thymidine_phosphorylase}}
+
{{#set: in pathway=PWY-7117|PWY-7115}}
−
{{#set: ec number=EC-2.7.4.23}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: gene associated=Tiso_gene_1011}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
−
{{#set: in pathway=PWY-7805|PWY0-661|PWY-7807}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 21:02, 21 March 2018

Reaction RXN-13697

  • direction:
    • REVERSIBLE
  • common name:
    • aspartate_aminotransferase
    • aminotransferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type: PWY-7117
    • 7 reactions found over 10 reactions in the full pathway
  • PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type: PWY-7115
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-13697&oldid=45462"