Difference between revisions of "RXN-11840"

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(Created page with "Category:Gene == Gene Tiso_gene_15049 == * left end position: ** 370 * transcription direction: ** POSITIVE * right end position: ** 2263 * centisome position: ** 3.731719...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11840 RXN-11840] == * direction: ** LEFT-TO-RIGHT * common name: ** trna_pseudouridinesynthase...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_15049 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11840 RXN-11840] ==
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* left end position:
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* direction:
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** 370
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** trna_pseudouridinesynthase
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* right end position:
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** trna_pseudouridine_synthase
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** 2263
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/5.4.99.26 EC-5.4.99.26]
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** 3.7317197   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[AGPT]]
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* With identifiers:
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** [[pantograph]]-[[creinhardtii]]
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** 1 [[tRNA-uridine65]][c] '''=>''' 1 [[tRNA-pseudouridine65]][c]
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* [[ATDGM]]
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* With common name(s):
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** [[pantograph]]-[[creinhardtii]]
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** 1 a uridine65 in tRNA[c] '''=>''' 1 a pseudouridine65 in tRNA[c]
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* [[GUANYL-KIN-RXN]]
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** in-silico_annotation
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== Genes associated with this reaction  ==
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***ec-number
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Genes have been associated with this reaction based on different elements listed below.
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** [[pantograph]]-[[athaliana]]
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* Gene: [[Tiso_gene_11913]]
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** [[pantograph]]-[[synechocystis]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Pathways associated ==
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* Gene: [[Tiso_gene_9833]]
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* [[PWY-7221]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_4020]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_19622]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_18959]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_2988]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_4021]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Pathways ==
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=370}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=trna_pseudouridinesynthase}}
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{{#set: right end position=2263}}
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{{#set: common name=trna_pseudouridine_synthase}}
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{{#set: centisome position=3.7317197    }}
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{{#set: ec number=EC-5.4.99.26}}
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{{#set: reaction associated=AGPT|ATDGM|GUANYL-KIN-RXN}}
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{{#set: gene associated=Tiso_gene_11913|Tiso_gene_9833|Tiso_gene_4020|Tiso_gene_19622|Tiso_gene_18959|Tiso_gene_2988|Tiso_gene_4021}}
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{{#set: pathway associated=PWY-7221}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:03, 21 March 2018

Reaction RXN-11840

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • trna_pseudouridinesynthase
    • trna_pseudouridine_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-11840&oldid=45479"