Difference between revisions of "OHMETHYLBILANESYN-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_152 == * left end position: ** 28220 * transcription direction: ** POSITIVE * right end position: ** 30377 * centisome position: ** 69.5553...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHMETHYLBILANESYN-RXN OHMETHYLBILANESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** hyd...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_152 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHMETHYLBILANESYN-RXN OHMETHYLBILANESYN-RXN] ==
−
* left end position:
+
* direction:
−
** 28220
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** POSITIVE
+
** hydroxymethylbilane_synthase
−
* right end position:
+
** uroporphyrinogen_synthase
−
** 30377
+
* ec number:
−
* centisome position:
+
** [http://enzyme.expasy.org/EC/2.5.1.61 EC-2.5.1.61]
−
** 69.55536   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[RXN-13398]]
+
* With identifiers:
−
** in-silico_annotation
+
** 4 [[PORPHOBILINOGEN]][c] '''+''' 1 [[WATER]][c] '''=>''' 4 [[AMMONIUM]][c] '''+''' 1 [[HYDROXYMETHYLBILANE]][c]
−
***ec-number
+
* With common name(s):
−
* [[RXN-7676]]
+
** 4 porphobilinogen[c] '''+''' 1 H2O[c] '''=>''' 4 ammonium[c] '''+''' 1 preuroporphyrinogen[c]
−
** in-silico_annotation
+
 
−
***ec-number
+
== Genes associated with this reaction  ==
−
* [[RXN-7677]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** in-silico_annotation
+
* Gene: [[Tiso_gene_11630]]
−
***ec-number
+
** Source: [[annotation-in-silico_annotation]]
−
== Pathways associated ==
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[PWY-5068]]
+
* Gene: [[Tiso_gene_14709]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
== Pathways ==
 +
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5189 PWY-5189]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=28220}}
+
* RHEA:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13185 13185]
−
{{#set: right end position=30377}}
+
* LIGAND-RXN:
−
{{#set: centisome position=69.55536    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00084 R00084]
−
{{#set: reaction associated=RXN-13398|RXN-7676|RXN-7677}}
+
* UNIPROT:
−
{{#set: pathway associated=PWY-5068}}
+
** [http://www.uniprot.org/uniprot/Q57989 Q57989]
 +
** [http://www.uniprot.org/uniprot/O29026 O29026]
 +
** [http://www.uniprot.org/uniprot/P64336 P64336]
 +
** [http://www.uniprot.org/uniprot/Q9ZMJ7 Q9ZMJ7]
 +
** [http://www.uniprot.org/uniprot/Q9PHW9 Q9PHW9]
 +
** [http://www.uniprot.org/uniprot/Q9JVS4 Q9JVS4]
 +
** [http://www.uniprot.org/uniprot/P28464 P28464]
 +
** [http://www.uniprot.org/uniprot/Q9K0P6 Q9K0P6]
 +
** [http://www.uniprot.org/uniprot/P56140 P56140]
 +
** [http://www.uniprot.org/uniprot/Q9Y9J0 Q9Y9J0]
 +
** [http://www.uniprot.org/uniprot/Q9RRY0 Q9RRY0]
 +
** [http://www.uniprot.org/uniprot/O26960 O26960]
 +
** [http://www.uniprot.org/uniprot/Q9ZD77 Q9ZD77]
 +
** [http://www.uniprot.org/uniprot/P06983 P06983]
 +
** [http://www.uniprot.org/uniprot/P13446 P13446]
 +
** [http://www.uniprot.org/uniprot/P08397 P08397]
 +
** [http://www.uniprot.org/uniprot/P22907 P22907]
 +
** [http://www.uniprot.org/uniprot/P19356 P19356]
 +
** [http://www.uniprot.org/uniprot/Q43082 Q43082]
 +
** [http://www.uniprot.org/uniprot/P40129 P40129]
 +
** [http://www.uniprot.org/uniprot/P30527 P30527]
 +
** [http://www.uniprot.org/uniprot/P28789 P28789]
 +
** [http://www.uniprot.org/uniprot/Q60169 Q60169]
 +
** [http://www.uniprot.org/uniprot/Q43316 Q43316]
 +
** [http://www.uniprot.org/uniprot/Q49808 Q49808]
 +
** [http://www.uniprot.org/uniprot/P73660 P73660]
 +
** [http://www.uniprot.org/uniprot/Q9WX16 Q9WX16]
 +
** [http://www.uniprot.org/uniprot/Q09899 Q09899]
 +
** [http://www.uniprot.org/uniprot/Q9ZND1 Q9ZND1]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=hydroxymethylbilane_synthase}}
 +
{{#set: common name=uroporphyrinogen_synthase}}
 +
{{#set: ec number=EC-2.5.1.61}}
 +
{{#set: gene associated=Tiso_gene_11630|Tiso_gene_14709}}
 +
{{#set: in pathway=PWY-5189|PWY-5188}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:03, 21 March 2018

Reaction OHMETHYLBILANESYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • hydroxymethylbilane_synthase
    • uroporphyrinogen_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5189, tetrapyrrole biosynthesis II (from glycine): PWY-5189
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5188, tetrapyrrole biosynthesis I (from glutamate): PWY-5188
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=OHMETHYLBILANESYN-RXN&oldid=45526"