Difference between revisions of "OHMETHYLBILANESYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TETRAACYLDISACC4KIN-RXN TETRAACYLDISACC4KIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHMETHYLBILANESYN-RXN OHMETHYLBILANESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** hyd...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TETRAACYLDISACC4KIN-RXN TETRAACYLDISACC4KIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHMETHYLBILANESYN-RXN OHMETHYLBILANESYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ORF
+
** hydroxymethylbilane_synthase
 +
** uroporphyrinogen_synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.1.130 EC-2.7.1.130]
+
** [http://enzyme.expasy.org/EC/2.5.1.61 EC-2.5.1.61]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[BISOHMYR-GLC]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[LIPID-IV-A]][c]
+
** 4 [[PORPHOBILINOGEN]][c] '''+''' 1 [[WATER]][c] '''=>''' 4 [[AMMONIUM]][c] '''+''' 1 [[HYDROXYMETHYLBILANE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 lipid A disaccharide[c] '''+''' 1 ATP[c] '''=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 lipid IVA[c]
+
** 4 porphobilinogen[c] '''+''' 1 H2O[c] '''=>''' 4 ammonium[c] '''+''' 1 preuroporphyrinogen[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_8779]]
+
* Gene: [[Tiso_gene_11630]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_8780]]
+
* Gene: [[Tiso_gene_14709]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[NAGLIPASYN-PWY]], lipid IVA biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=NAGLIPASYN-PWY NAGLIPASYN-PWY]
+
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5189 PWY-5189]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20700 20700]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13185 13185]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04657 R04657]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00084 R00084]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P27300 P27300]
+
** [http://www.uniprot.org/uniprot/Q57989 Q57989]
−
** [http://www.uniprot.org/uniprot/O67572 O67572]
+
** [http://www.uniprot.org/uniprot/O29026 O29026]
−
** [http://www.uniprot.org/uniprot/Q9PPA9 Q9PPA9]
+
** [http://www.uniprot.org/uniprot/P64336 P64336]
−
** [http://www.uniprot.org/uniprot/Q9JVE4 Q9JVE4]
+
** [http://www.uniprot.org/uniprot/Q9ZMJ7 Q9ZMJ7]
−
** [http://www.uniprot.org/uniprot/Q9KQX0 Q9KQX0]
+
** [http://www.uniprot.org/uniprot/Q9PHW9 Q9PHW9]
−
** [http://www.uniprot.org/uniprot/Q9HZM3 Q9HZM3]
+
** [http://www.uniprot.org/uniprot/Q9JVS4 Q9JVS4]
−
** [http://www.uniprot.org/uniprot/Q9ZCL0 Q9ZCL0]
+
** [http://www.uniprot.org/uniprot/P28464 P28464]
−
** [http://www.uniprot.org/uniprot/Q9K0D7 Q9K0D7]
+
** [http://www.uniprot.org/uniprot/Q9K0P6 Q9K0P6]
−
** [http://www.uniprot.org/uniprot/P44491 P44491]
+
** [http://www.uniprot.org/uniprot/P56140 P56140]
−
** [http://www.uniprot.org/uniprot/Q9PEE6 Q9PEE6]
+
** [http://www.uniprot.org/uniprot/Q9Y9J0 Q9Y9J0]
−
** [http://www.uniprot.org/uniprot/O25095 O25095]
+
** [http://www.uniprot.org/uniprot/Q9RRY0 Q9RRY0]
−
** [http://www.uniprot.org/uniprot/Q9ZMB1 Q9ZMB1]
+
** [http://www.uniprot.org/uniprot/O26960 O26960]
 +
** [http://www.uniprot.org/uniprot/Q9ZD77 Q9ZD77]
 +
** [http://www.uniprot.org/uniprot/P06983 P06983]
 +
** [http://www.uniprot.org/uniprot/P13446 P13446]
 +
** [http://www.uniprot.org/uniprot/P08397 P08397]
 +
** [http://www.uniprot.org/uniprot/P22907 P22907]
 +
** [http://www.uniprot.org/uniprot/P19356 P19356]
 +
** [http://www.uniprot.org/uniprot/Q43082 Q43082]
 +
** [http://www.uniprot.org/uniprot/P40129 P40129]
 +
** [http://www.uniprot.org/uniprot/P30527 P30527]
 +
** [http://www.uniprot.org/uniprot/P28789 P28789]
 +
** [http://www.uniprot.org/uniprot/Q60169 Q60169]
 +
** [http://www.uniprot.org/uniprot/Q43316 Q43316]
 +
** [http://www.uniprot.org/uniprot/Q49808 Q49808]
 +
** [http://www.uniprot.org/uniprot/P73660 P73660]
 +
** [http://www.uniprot.org/uniprot/Q9WX16 Q9WX16]
 +
** [http://www.uniprot.org/uniprot/Q09899 Q09899]
 +
** [http://www.uniprot.org/uniprot/Q9ZND1 Q9ZND1]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ORF}}
+
{{#set: common name=hydroxymethylbilane_synthase}}
−
{{#set: ec number=EC-2.7.1.130}}
+
{{#set: common name=uroporphyrinogen_synthase}}
−
{{#set: gene associated=Tiso_gene_8779|Tiso_gene_8780}}
+
{{#set: ec number=EC-2.5.1.61}}
−
{{#set: in pathway=NAGLIPASYN-PWY}}
+
{{#set: gene associated=Tiso_gene_11630|Tiso_gene_14709}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: in pathway=PWY-5189|PWY-5188}}
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:03, 21 March 2018

Reaction OHMETHYLBILANESYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • hydroxymethylbilane_synthase
    • uroporphyrinogen_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5189, tetrapyrrole biosynthesis II (from glycine): PWY-5189
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5188, tetrapyrrole biosynthesis I (from glutamate): PWY-5188
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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