Difference between revisions of "Tiso gene 9739"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12376 RXN-12376] == * direction: ** LEFT-TO-RIGHT * common name: ** trna_(guanine_-n1)-methyltr...")
 
(Created page with "Category:Gene == Gene Tiso_gene_9739 == * right end position: ** 5342 * transcription direction: ** POSITIVE * left end position: ** 3701 * centisome position: ** 33.33934...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12376 RXN-12376] ==
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== Gene Tiso_gene_9739 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5342
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* common name:
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* transcription direction:
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** trna_(guanine_-n1)-methyltransferase
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** POSITIVE
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** probable_trna_(guanine_-n_)-dimethyltransferase_1
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* left end position:
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* ec number:
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** 3701
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** [http://enzyme.expasy.org/EC/2.1.1.216 EC-2.1.1.216]
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* centisome position:
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** 33.33934   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ATCM]]
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** 1 [[tRNA-Containing-N2-Methylguanine-26]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[tRNA-Containing-N2-dimethylguanine-26]][c]
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** Source: [[orthology-creinhardtii]]
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* With common name(s):
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* Reaction: [[ATCMf]]
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** 1 an N2-methylguanine26 in tRNA[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 H+[c] '''+''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 an N2dimethylguanine26 in tRNA[c]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[ATDCM]]
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== Genes associated with this reaction  ==
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** Source: [[orthology-creinhardtii]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[ATDCMf]]
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* [[Tiso_gene_16307]]
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** Source: [[orthology-creinhardtii]]
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** IN-SILICO_ANNOTATION
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* Reaction: [[RXN-11832]]
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***EC-NUMBER
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** Source: [[annotation-in-silico_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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* [[Tiso_gene_9360]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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* Reaction: [[RXN-12002]]
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***EC-NUMBER
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** Source: [[annotation-in-silico_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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== Pathways  ==
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*** Assignment: ec-number
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* [[PWY-6829]], tRNA methylation (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6829 PWY-6829]
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** Source: [[orthology-creinhardtii]]
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** '''3''' reactions found over '''15''' reactions in the full pathway
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* Reaction: [[RXN-7913]]
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== Reconstruction information  ==
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** Source: [[annotation-in-silico_annotation]]
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* [[annotation]]:
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*** Assignment: ec-number
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** [[pathwaytools]]:
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** Source: [[annotation-experimental_annotation]]
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*** [[experimental_annotation]]
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*** Assignment: ec-number
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*** [[in-silico_annotation]]
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* Reaction: [[UMPKf]]
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** Source: [[orthology-creinhardtii]]
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== Pathways associated ==
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* [[PWY-7205]]
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* [[PWY-7197]]
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* [[PWY-7176]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=5342}}
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{{#set: common name=trna_(guanine_-n1)-methyltransferase}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=probable_trna_(guanine_-n_)-dimethyltransferase_1}}
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{{#set: left end position=3701}}
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{{#set: ec number=EC-2.1.1.216}}
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{{#set: centisome position=33.33934    }}
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{{#set: gene associated=Tiso_gene_16307|Tiso_gene_9360}}
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{{#set: reaction associated=ATCM|ATCMf|ATDCM|ATDCMf|RXN-11832|RXN-12002|RXN-7913|UMPKf}}
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{{#set: in pathway=PWY-6829}}
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{{#set: pathway associated=PWY-7205|PWY-7197|PWY-7176}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 21:03, 21 March 2018

Gene Tiso_gene_9739

  • right end position:
    • 5342
  • transcription direction:
    • POSITIVE
  • left end position:
    • 3701
  • centisome position:
    • 33.33934
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_9739&oldid=45603"